View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2823_high_6 (Length: 277)
Name: NF2823_high_6
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 379777 - 380024
Alignment:
| Q |
17 |
cagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggtcaggtaaatatgttcaaatccatttgactattttcctg |
116 |
Q |
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| T |
379777 |
cagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt-----aaatatgttcaaatccttttgaatattttcctg |
379871 |
T |
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| Q |
117 |
gttacttggtagatacgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcg |
216 |
Q |
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| T |
379872 |
gttacttggtagatacgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcccgattgcatcaaaatattcg |
379971 |
T |
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| Q |
217 |
actttgaaatgttttatgtgcatggagggagtattcattgatttccaatctgt |
269 |
Q |
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| T |
379972 |
actttaaaatgttttatgtgcatggagggagtattcattgatttccaatctgt |
380024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6298695 - 6298756
Alignment:
| Q |
17 |
cagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
78 |
Q |
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| T |
6298695 |
cagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6298756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 6299225 - 6299323
Alignment:
| Q |
167 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
266 |
Q |
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| T |
6299225 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6299320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6305505 - 6305566
Alignment:
| Q |
17 |
cagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
78 |
Q |
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| T |
6305505 |
cagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6305566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 6306035 - 6306133
Alignment:
| Q |
167 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
266 |
Q |
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| T |
6306035 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6306130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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