View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2823_high_7 (Length: 238)
Name: NF2823_high_7
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 39618335 - 39618117
Alignment:
| Q |
3 |
tgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccct |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39618335 |
tgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataatttattaaccct |
39618236 |
T |
|
| Q |
103 |
ttattataacaaacccattattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtac |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39618235 |
ttattataacaaacccattattaacactttgaattttttttctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtac |
39618136 |
T |
|
| Q |
203 |
attttatgtaattaatagt |
221 |
Q |
| |
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|||||||||| ||||||| |
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| T |
39618135 |
attttatgtacgtaatagt |
39618117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31962422 - 31962378
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactt |
48 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31962422 |
tttgattgataatgaaaatat---gacaacaacaataatctatcactt |
31962378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35238609 - 35238390
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35238609 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataatttattaacc |
35238510 |
T |
|
| Q |
101 |
ctttattataacaaacccattattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35238509 |
ctttattataacaaacccattattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagt |
35238411 |
T |
|
| Q |
201 |
acattttatgtaattaatagt |
221 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
35238410 |
acattttatgtacgtaatagt |
35238390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 30500819 - 30500628
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
30500819 |
tttgattgataatgaaaatatgacgacaacaacaatattctataactttctccaacaaaagaaattctatcactattgacccaaacataatttattaacc |
30500720 |
T |
|
| Q |
101 |
ctttattataacaaacccattattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcatttt |
193 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30500719 |
ctttattataacaaacccattattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcatttt |
30500628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36558530 - 36558749
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaacc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
36558530 |
tttgattgataatgaaaatatgatgacaacaacaataatctataactttctccaacaaaagaaattctatgactattggcccaaacataatttattaacc |
36558629 |
T |
|
| Q |
101 |
ctttattataacaaacccattattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36558630 |
ctttattataacaaacccattattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagt |
36558728 |
T |
|
| Q |
201 |
acattttatgtaattaatagt |
221 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
36558729 |
acattttatgtacgtaatagt |
36558749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2411130 - 2411323
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
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| T |
2411130 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaaaaaattctatcactattagcccaaacataatttattaacc |
2411229 |
T |
|
| Q |
101 |
ctttattataacaaacccattattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411230 |
ctttattataacaaacccattattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttat |
2411323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19532267 - 19532217
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttct |
51 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
19532267 |
tttgattgagaatgaaaatatgacgacgacaacaacaatctataactttct |
19532217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 24026580 - 24026535
Alignment:
| Q |
178 |
gctttaagtgcattttataaagtacattttatgtaattaatagttg |
223 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||||| |
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|
| T |
24026580 |
gctttaagtgtattttataaagtacattttatataaaaaatagttg |
24026535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 18231482 - 18231442
Alignment:
| Q |
94 |
attaaccctttattataacaaacccattattaacactttga |
134 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
18231482 |
attaaccctttattataacaaaccctttattaacactttga |
18231442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 10714015 - 10714049
Alignment:
| Q |
2 |
ttgattgataatgaaaatatgacgacaacaacaat |
36 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
10714015 |
ttgattgacaatgaaaatatgacgacaacaacaat |
10714049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20167712 - 20167796
Alignment:
| Q |
1 |
tttgattgataatgaaaatatgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaa |
85 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||| | | | |||| || |||||||||| ||||||||| |
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|
| T |
20167712 |
tttgattgataatgaaaatacgacgccaacaacaataatctatcccttttttccaaaaaattaaatctatcactagtggcccaaa |
20167796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 21734368 - 21734413
Alignment:
| Q |
178 |
gctttaagtgcattttataaagtacattttatgtaattaatagttg |
223 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
21734368 |
gctttaagtgtattttatgaagtacattttatataagtaatagttg |
21734413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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