View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2823_low_1 (Length: 610)

Name: NF2823_low_1
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2823_low_1
NF2823_low_1
[»] chr6 (9 HSPs)
chr6 (370-531)||(2996224-2996386)
chr6 (532-598)||(2996414-2996480)
chr6 (559-598)||(2980098-2980137)
chr6 (563-598)||(2983974-2984009)
chr6 (193-228)||(16193825-16193860)
chr6 (185-234)||(2996055-2996104)
chr6 (192-228)||(15057111-15057147)
chr6 (200-228)||(28606479-28606507)
chr6 (192-228)||(28606567-28606603)
[»] scaffold0011 (1 HSPs)
scaffold0011 (372-443)||(13415-13486)
[»] chr4 (9 HSPs)
chr4 (557-598)||(38885789-38885830)
chr4 (193-228)||(11392394-11392429)
chr4 (193-234)||(30023635-30023676)
chr4 (191-234)||(337030-337073)
chr4 (195-233)||(22435442-22435480)
chr4 (192-234)||(35297495-35297537)
chr4 (185-223)||(43063537-43063575)
chr4 (199-228)||(29821361-29821390)
chr4 (193-234)||(46321425-46321466)
[»] chr8 (4 HSPs)
chr8 (193-228)||(31470840-31470875)
chr8 (192-228)||(3647481-3647517)
chr8 (193-228)||(7931551-7931586)
chr8 (185-228)||(32857068-32857111)
[»] chr3 (6 HSPs)
chr3 (193-228)||(53299824-53299859)
chr3 (192-225)||(26960937-26960970)
chr3 (192-228)||(26960839-26960875)
chr3 (193-233)||(29081690-29081730)
chr3 (193-234)||(48342306-48342347)
chr3 (194-227)||(53299734-53299767)
[»] chr2 (6 HSPs)
chr2 (192-226)||(18182528-18182562)
chr2 (195-228)||(1355989-1356022)
chr2 (193-233)||(5095804-5095844)
chr2 (193-223)||(7755363-7755393)
chr2 (185-219)||(12918552-12918586)
chr2 (185-219)||(39819082-39819116)
[»] chr7 (5 HSPs)
chr7 (193-234)||(32315734-32315775)
chr7 (197-228)||(6980892-6980923)
chr7 (192-228)||(16648911-16648947)
chr7 (192-228)||(17623272-17623308)
chr7 (192-224)||(27385931-27385963)
[»] chr5 (5 HSPs)
chr5 (192-228)||(34394691-34394727)
chr5 (187-233)||(4376371-4376417)
chr5 (185-219)||(29385390-29385424)
chr5 (192-228)||(5998555-5998591)
chr5 (192-224)||(20986462-20986494)
[»] chr1 (6 HSPs)
chr1 (193-228)||(10449475-10449510)
chr1 (193-228)||(44291144-44291179)
chr1 (193-223)||(4579195-4579225)
chr1 (191-225)||(44382433-44382467)
chr1 (194-234)||(44801780-44801821)
chr1 (185-225)||(421227-421267)
[»] scaffold0343 (1 HSPs)
scaffold0343 (191-224)||(12307-12340)
[»] scaffold0312 (1 HSPs)
scaffold0312 (185-225)||(9304-9344)
[»] scaffold0031 (1 HSPs)
scaffold0031 (192-228)||(105402-105438)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 370 - 531
Target Start/End: Original strand, 2996224 - 2996386
Alignment:
Q  370 acaatagcacattggagcaatcaatacaagatagtggcaagcaaaagcaaattacacttctccaaaagtcacgaacaca-gaggtccaccaaggcaaaag 468  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | || |||| ||||||||||    
T  2996224 acaatagcacattggagcaatcaatacaagctagtggcaagcaaaagcaaatcacacttctccaaaagtcacgaacacatggggcccacaaaggcaaaag 2996323  T
Q  469 gagatgaaagatttcataaagagacgccttcttgaaaactccaaaaaactaccaccaccaacc 531  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996324 gagacgaaagattccataaagagacgccttcttgaaaactctaaaaaactaccaccaccaacc 2996386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 598
Target Start/End: Original strand, 2996414 - 2996480
Alignment:
Q  532 atacacgcagctgcactatatttttgttatgatgggtttgagttgcatggttttgcttatgagccta 598  Q
    |||||||||  |||| | || ||| |||||||||||||||||||||||||| |||||||||||||||    
T  2996414 atacacgcacttgcattctactttggttatgatgggtttgagttgcatggtcttgcttatgagccta 2996480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 598
Target Start/End: Complemental strand, 2980137 - 2980098
Alignment:
Q  559 tatgatgggtttgagttgcatggttttgcttatgagccta 598  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2980137 tatgatgggtttgagttgcatggttttgcttatgaaccta 2980098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 598
Target Start/End: Complemental strand, 2984009 - 2983974
Alignment:
Q  563 atgggtttgagttgcatggttttgcttatgagccta 598  Q
    |||||||||||||||||| |||||||||||||||||    
T  2984009 atgggtttgagttgcatgattttgcttatgagccta 2983974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 16193860 - 16193825
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||| |||||||||||||||||||||||||    
T  16193860 gtgacattggtcaaccacaatgtcacaagtgtacaa 16193825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 2996055 - 2996104
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    ||||||||||||||||||  |||| |||| |||||||||||||| |||||    
T  2996055 tgacatttgtgacattggttaaccccaatatcacaagtgtacaacaaaac 2996104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 15057147 - 15057111
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  15057147 tgtgacattggccaaccaaaatatcacaagtgtacaa 15057111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 28606479 - 28606507
Alignment:
Q  200 tggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||||||||||||||||||||||    
T  28606479 tggccaaccacaatgtcacaagtgtacaa 28606507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 28606603 - 28606567
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||||||||||||||||||  ||||||||||    
T  28606603 tgtgacattggccaaccacaatgtcttaagtgtacaa 28606567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 13415 - 13486
Alignment:
Q  372 aatagcacattggagcaatcaatacaagatagtggcaagcaaaagcaaattacacttctccaaaagtcacga 443  Q
    ||||| |||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  13415 aatagaacattgaagcaatcaacacaagctagtggcaagcaaaaacaaatcacacttctccaaaagtcacga 13486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 557 - 598
Target Start/End: Complemental strand, 38885830 - 38885789
Alignment:
Q  557 gttatgatgggtttgagttgcatggttttgcttatgagccta 598  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38885830 gttatgatgggtttgagttgcatggttttgcttatgagccta 38885789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 11392429 - 11392394
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  11392429 gtgacattggccaaccacaatgtcacaagtgtacaa 11392394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 30023676 - 30023635
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  30023676 gtgacattgaccaaccacaatgtcacaagtgtacaaaaaaac 30023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 337073 - 337030
Alignment:
Q  191 ttgtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  337073 ttgtgacattgaccaaccacaatgtcaaaagtgtacaaaaaaac 337030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 22435480 - 22435442
Alignment:
Q  195 gacattggccaaccacaatgtcacaagtgtacaataaaa 233  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  22435480 gacattgaccaaccacaatgtcacaagtgtacaaaaaaa 22435442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 35297495 - 35297537
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  35297495 tgtgacattgaccaaccacaatatcacaagtgtacaaaaaaac 35297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 43063537 - 43063575
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcacaagtg 223  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  43063537 tgacattggtgacattagccaaccacaatgtcacaagtg 43063575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 29821361 - 29821390
Alignment:
Q  199 ttggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||    
T  29821361 ttggccaaccacaatgtcacaagtgtacaa 29821390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 46321466 - 46321425
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  46321466 gtgacattgaccaaccacaatgtcacaactgtacaaaaaaac 46321425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 31470875 - 31470840
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  31470875 gtgacattggccaaccacaatgtcacaagtgtacaa 31470840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 3647517 - 3647481
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3647517 tgtgacattggccaaccacaatgacacaagtgtacaa 3647481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 7931551 - 7931586
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7931551 gtgacattgaccaaccacaatgtcacaagtgtacaa 7931586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 32857111 - 32857068
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||  |||||| ||||||||||||||||||||||||||||    
T  32857111 tgacattgatgacataggccaaccacaatgtcacaagtgtacaa 32857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 53299859 - 53299824
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  53299859 gtgacattggccaaccacaatgtcacaagtgtacaa 53299824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 26960970 - 26960937
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgta 225  Q
    ||||||||||||||||||||||||||||||||||    
T  26960970 tgtgacattggccaaccacaatgtcacaagtgta 26960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 26960839 - 26960875
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26960839 tgtgacattagccaaccacaatgtcacaagtgtacaa 26960875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 29081730 - 29081690
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaa 233  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  29081730 gtgacattggtcaaccacaatgtcacaagtgtacaaaaaaa 29081690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 48342347 - 48342306
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    |||| ||||||||||||||||||||||| ||||||| |||||    
T  48342347 gtgatattggccaaccacaatgtcacaaatgtacaaaaaaac 48342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 53299734 - 53299767
Alignment:
Q  194 tgacattggccaaccacaatgtcacaagtgtaca 227  Q
    |||||||||||||||||||||||||| |||||||    
T  53299734 tgacattggccaaccacaatgtcacaggtgtaca 53299767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 18182528 - 18182562
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtac 226  Q
    |||||||||||||||||||||||||||||||||||    
T  18182528 tgtgacattggccaaccacaatgtcacaagtgtac 18182562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 1356022 - 1355989
Alignment:
Q  195 gacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||||||    
T  1356022 gacattggccaaccacaatgtcacaagtgtacaa 1355989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 5095844 - 5095804
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaa 233  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  5095844 gtgacattggccaaccacaatgtcacaaatgtacaaaaaaa 5095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 7755363 - 7755393
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtg 223  Q
    |||||||||||||||||||||||||||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtg 7755393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 12918552 - 12918586
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcaca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  12918552 tgacattggtgacattggccaaccacaatgtcaca 12918586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 39819082 - 39819116
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcaca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  39819082 tgacattggtgacattggccaaccacaatgtcaca 39819116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 32315734 - 32315775
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaataaaac 234  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  32315734 gtgacattggccaaccacaatgtcacaattgtacaaaaaaac 32315775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 6980892 - 6980923
Alignment:
Q  197 cattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||||||||||||||||||||||||    
T  6980892 cattggccaaccacaatgtcacaagtgtacaa 6980923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 16648947 - 16648911
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  16648947 tgtgacattggcaaaccacaatttcacaagtgtacaa 16648911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 17623308 - 17623272
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  17623308 tgtgacattggcaaaccacaatatcacaagtgtacaa 17623272  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 27385963 - 27385931
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgt 224  Q
    |||||| ||||||||||||||||||||||||||    
T  27385963 tgtgacgttggccaaccacaatgtcacaagtgt 27385931  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 34394691 - 34394727
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34394691 tgtgacattggtcaaccacaatgtcacaagtgtacaa 34394727  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 4376371 - 4376417
Alignment:
Q  187 acatttgtgacattggccaaccacaatgtcacaagtgtacaataaaa 233  Q
    ||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  4376371 acattcgtgccattggtcaaccacaatgtcacaagtgtacaaaaaaa 4376417  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 29385424 - 29385390
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcaca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  29385424 tgacattggtgacattggccaaccacaatgtcaca 29385390  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 5998555 - 5998591
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  5998555 tgtgacattggtcaaccacaatgtcagaagtgtacaa 5998591  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 20986462 - 20986494
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgt 224  Q
    ||||||||||| |||||||||||||||||||||    
T  20986462 tgtgacattggtcaaccacaatgtcacaagtgt 20986494  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 10449475 - 10449510
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10449475 gtgacattgaccaaccacaatgtcacaagtgtacaa 10449510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 44291179 - 44291144
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||| |||||||||||||||||||||||||    
T  44291179 gtgacattggtcaaccacaatgtcacaagtgtacaa 44291144  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 4579195 - 4579225
Alignment:
Q  193 gtgacattggccaaccacaatgtcacaagtg 223  Q
    |||||||||||||||||||||||||||||||    
T  4579195 gtgacattggccaaccacaatgtcacaagtg 4579225  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 44382467 - 44382433
Alignment:
Q  191 ttgtgacattggccaaccacaatgtcacaagtgta 225  Q
    ||||||||||||||||||||||| |||||||||||    
T  44382467 ttgtgacattggccaaccacaatatcacaagtgta 44382433  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 44801780 - 44801821
Alignment:
Q  194 tgacattggccaaccacaatgtcac-aagtgtacaataaaac 234  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  44801780 tgacattggccaaccacaatgtcacaaagtgtacaaaaaaac 44801821  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 421267 - 421227
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcacaagtgta 225  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  421267 tgacattggcgacattggccaaccacaatgtcataagtgta 421227  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 12340 - 12307
Alignment:
Q  191 ttgtgacattggccaaccacaatgtcacaagtgt 224  Q
    ||||||||||| ||||||||||||||||||||||    
T  12340 ttgtgacattgaccaaccacaatgtcacaagtgt 12307  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 9304 - 9344
Alignment:
Q  185 tgacatttgtgacattggccaaccacaatgtcacaagtgta 225  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  9304 tgacattggcgacattggccaaccacaatgtcataagtgta 9344  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 105402 - 105438
Alignment:
Q  192 tgtgacattggccaaccacaatgtcacaagtgtacaa 228  Q
    |||||||||| |||| |||||||||||||||||||||    
T  105402 tgtgacattgaccaatcacaatgtcacaagtgtacaa 105438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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