View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2823_low_12 (Length: 214)
Name: NF2823_low_12
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6462386 - 6462585
Alignment:
| Q |
1 |
cttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagacaataagaaagctgatgaga |
100 |
Q |
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| T |
6462386 |
cttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttataaaaaaaatggaagacaataagaaagctgatgaga |
6462485 |
T |
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| Q |
101 |
aggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaaatgt |
200 |
Q |
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| T |
6462486 |
aggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaaatgt |
6462585 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 42252149 - 42252209
Alignment:
| Q |
136 |
ggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaa |
196 |
Q |
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| T |
42252149 |
ggaaggaataaaagaggataagaaagttgatgaagggaaagaaacaaaagaggatgagaaa |
42252209 |
T |
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