View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2823_low_4 (Length: 359)
Name: NF2823_low_4
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 37592304 - 37592069
Alignment:
| Q |
11 |
catcatcatccatggatgccttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtataactctttac----ttctctgtaaat |
106 |
Q |
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| T |
37592304 |
catcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttctttctctgtaaat |
37592205 |
T |
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| Q |
107 |
cagcaattattctatacaatttcaagagttttattga---------atttttgtttctctagactggattttcatctccaactcaagatgctatcaggaa |
197 |
Q |
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| T |
37592204 |
cagcaattattttatacaatttcaagagttttatataatttttgttatttttgtttttccagactgggtattcatctccagctcaagatgctatcaggag |
37592105 |
T |
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| Q |
198 |
ggatcttaatctttctttggcagaggtaagccagta |
233 |
Q |
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| T |
37592104 |
ggatcttaatctgtctttggaagaggtaagccagta |
37592069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 37461985 - 37462087
Alignment:
| Q |
11 |
catcatcatccatggatgccttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtataactctttacttctctgtaaatcagc |
110 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
37461985 |
catcatcatccatggatggtttacttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtctttacttctctgtaaatcagc |
37462084 |
T |
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| Q |
111 |
aat |
113 |
Q |
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||| |
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| T |
37462085 |
aat |
37462087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 37462214 - 37462286
Alignment:
| Q |
161 |
ctggattttcatctccaactcaagatgctatcaggaaggatcttaatctttctttggcagaggtaagccagta |
233 |
Q |
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| T |
37462214 |
ctggatattcatctccaactcaagaagctattaggaaggatcttagtctgtctttggcagaggtaagccagta |
37462286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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