View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2823_low_5 (Length: 328)
Name: NF2823_low_5
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 31527080 - 31526780
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31527080 |
agcacagaaagcattgtcagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgaca |
31526981 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31526980 |
cttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgt |
31526881 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcgaaggttctat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526880 |
ttcaagagatggctaagattaatgctgaggcggtacgtggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcgaaggttctat |
31526781 |
T |
|
| Q |
309 |
g |
309 |
Q |
| |
|
| |
|
|
| T |
31526780 |
g |
31526780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 51823970 - 51823681
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51823970 |
agcacagaaagcattggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgaca |
51823871 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51823870 |
cttggaaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgt |
51823771 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51823770 |
ttcaagagatggctaagattaatgctgaggcagtacgtggacttgaacctaagattagtatttggactaatggaggggacaatggaggcg |
51823681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 32593321 - 32593596
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593321 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
32593420 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32593421 |
cttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgt |
32593520 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggagg |
284 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593521 |
ttcaagagatggctaagatcaatgctgaggcagtacatggacttgaacctaagattagtatttggactaatggagg |
32593596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 37030419 - 37030141
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |
|
|
| T |
37030419 |
agcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgaca |
37030320 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
37030319 |
gttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattacttgatgataaatggtggcatgt |
37030220 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
287 |
Q |
| |
|
|||||||||| ||||||||||| || |||||| || | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
37030219 |
ttcaagagattgctaagattaacgccgaggcaatacgaggacttgagcctaagattagtatttggactaatgggggtga |
37030141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 49187273 - 49186995
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |
|
|
| T |
49187273 |
agcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgaca |
49187174 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |
|
|
| T |
49187173 |
cttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaagggattacttgatgataaatggtgacatgt |
49187074 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
287 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49187073 |
ttcaagagattgctaagattaatgccgaggcaatacgcggacttgagcctaagattagtatttggactaatggtggtga |
49186995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 49207201 - 49206930
Alignment:
| Q |
16 |
aaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggac |
115 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
49207201 |
aaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattatgacacttggga |
49207102 |
T |
|
| Q |
116 |
aagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaaga |
215 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49207101 |
atgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgtttcaaga |
49207002 |
T |
|
| Q |
216 |
gatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
287 |
Q |
| |
|
||| |||||||||||||| ||||| ||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49207001 |
gattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49206930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 49202253 - 49201981
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49202253 |
agcacagaaagcgtcagcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgaca |
49202154 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49202153 |
cttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgt |
49202054 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatgg |
281 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
49202053 |
ttcaagagattgctaagattaatgccgaggcagtacgcggacttgagcctaagattagtatttggactaatgg |
49201981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 49211782 - 49211504
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49211782 |
agcacaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgaca |
49211683 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | |||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49211682 |
cttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaagggattacttgatgataaatggtggcatgt |
49211583 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
287 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49211582 |
ttcaagagattgctaagattaatgctgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49211504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 49190964 - 49190686
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
49190964 |
agcacagaaagcattagcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgaca |
49190865 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | |||||||| |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
49190864 |
cttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgt |
49190765 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
287 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49190764 |
ttcaagagatcgctaagattaatgctgaggcagtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49190686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 26756251 - 26755979
Alignment:
| Q |
9 |
agcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgaca |
108 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||| || || |||||||| |||||||||||||| |||||||| || ||||| || ||||| |||||| |
|
|
| T |
26756251 |
agcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggcggaggggatcgtgaca |
26756152 |
T |
|
| Q |
109 |
attggacaagctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgt |
208 |
Q |
| |
|
|||| | | |||||| |||| ||||||||| |||||||| ||||||||| || || |||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
26756151 |
cttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttggaggtgattatacagctgtaagggactacttgatgataaatggtggcatgt |
26756052 |
T |
|
| Q |
209 |
ttcaagagatggctaagattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatgg |
281 |
Q |
| |
|
||| ||| || || ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26756051 |
ttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaagattagtatttggactaatgg |
26755979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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