View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2824_low_1 (Length: 618)
Name: NF2824_low_1
Description: NF2824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2824_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Original strand, 38707390 - 38707975
Alignment:
| Q |
14 |
gaacttgaaaatttaagagacaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaacatacgtgaa |
113 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38707390 |
gaacttgaaaatttaagagacaagcttcgacatctgaagatgcagtataacaaagagaaagagaggattgatgagatttgaaggctgaaacatacgtgaa |
38707489 |
T |
|
| Q |
114 |
gagctcctctttgcactacaggaggctgagaggtggtatgatcttgaaaaggtggaaaatgcaataaaaaatcttgaaggtagcactgatggaaacaaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707490 |
gagctcctctttgcactacaggaggctgagaggtggtatgatcttgaaaaggtggaaaatgcaataaaaaatcttgaaggtagcactgatggaaacaaag |
38707589 |
T |
|
| Q |
214 |
atgataacttgatgctgacagaaactgttggaccagaccatatagctaaggttgttagccgatggaccggtacaccggtgactcgtctagtgcaaaatga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707590 |
atgataacttgatgctgacagaaactgttggaccagaccatatagctaaggttgttagccgatggaccggtacaccggtgactcgtctagtgcaaaatga |
38707689 |
T |
|
| Q |
314 |
taaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatctgag |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38707690 |
taaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatc-gag |
38707788 |
T |
|
| Q |
414 |
agttggtttaagaagacctcaacaaccaactggtcccttcctattccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataa |
513 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707789 |
agttggtttaagaagacctcaaaaaccaactggtcccttcctattccttggtccaaatagtgttggtaaaacagaacttgctaaggctcttgctcaataa |
38707888 |
T |
|
| Q |
514 |
ctctttgctgatgaaaatcatatgattagacttgacatgtcggaatacatggaaaaagactctatcaagattgattggtgcaacacc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38707889 |
ctctttgctgatgaaaatcatatgattagactcgacatgtcggaatacatggaaaaagactctatcaagattgattggtgcaccacc |
38707975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 157 - 600
Target Start/End: Original strand, 10045741 - 10046185
Alignment:
| Q |
157 |
ttgaaaaggtggaaaatgcaataaaaaatcttgaaggtagcactgatggaaacaaagatgataacttgatgctgacagaaactgttggaccagaccatat |
256 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
10045741 |
ttgaagaggtggaaaatgcaataaaaaatcttgaaggtagcactgatgggaacaaaggtgagaacttgatgctgacagaaactgttggaccagatcaaat |
10045840 |
T |
|
| Q |
257 |
agctaaggttgttagccgatggaccggtacaccggtgactcgtctagtgcaaaatgataaagaaaggttggttggacttggtgacaaattgcacagtaga |
356 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||| | |||| |
|
|
| T |
10045841 |
tgctgaggttgttagccgatggaccggtataccagtgactcgtttaggccaaaatgataaagaaaggttggttggacttggagacagattgcatactaga |
10045940 |
T |
|
| Q |
357 |
gttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatctgagagttggtttaagaagacctcaacaaccaactggtcccttccta |
456 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||||||||||||| || || ||||| |||| || ||||||| ||||||||||||||| |||||||| |
|
|
| T |
10045941 |
gttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtc-gagagctggtctaggaagaccacaacaaccaactggttccttccta |
10046039 |
T |
|
| Q |
457 |
ttccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcgg |
556 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||| |||||||||||||||||| |
|
|
| T |
10046040 |
ttccttggtccaactggtgtcggtaaaacagaacttgctaaggctcttgctcaacaactctttgataatgaaaatcagatggttagacttgacatgtcgg |
10046139 |
T |
|
| Q |
557 |
aatacatggaaaaagactc--tatcaagattgattggtgcaacacc |
600 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||| |||| |
|
|
| T |
10046140 |
aatacatggagaaatactccgtatcaagattgattggtgcaccacc |
10046185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 10045563 - 10045708
Alignment:
| Q |
14 |
gaacttgaaaatttaagagacaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaac--atacgtg |
111 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
10045563 |
gaacttgacaatttaagagacaagcttcagcctctgaagatgaagtatatcaaagagaaagagaggattgatgagattcgaagtctgaaacagaaacgtg |
10045662 |
T |
|
| Q |
112 |
aagagctcctctttgcactacaggaggctgagaggtggtatgatct |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
10045663 |
aagagctcctctttgcactacaagaggctgagaggcggtatgatct |
10045708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 157 - 600
Target Start/End: Original strand, 45467594 - 45468038
Alignment:
| Q |
157 |
ttgaaaaggtggaaaatgcaataaaaaatcttgaaggtagcactgatggaaacaaagatgataacttgatgctgacagaaactgttggaccagaccatat |
256 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| ||||| ||||| ||| |||| ||||| |||||||| ||||| || |
|
|
| T |
45467594 |
ttgaagaggtggaaactgcaattaaaaatcttgaaggtagcactgatgggaacacggatgagaacttaatgttgacggaaacagttggaccggaccaaat |
45467693 |
T |
|
| Q |
257 |
agctaaggttgttagccgatggaccggtacaccggtgactcgtctagtgcaaaatgataaagaaaggttggttggacttggtgacaaattgcacagtaga |
356 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||| |||||| | || | |||||||| |||| ||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
45467694 |
agccgaggttgttagccgatggactggtataccagtgactaggctcggccaaaatgagaaagcaaggttggttggacttggtgacagactgcacactaga |
45467793 |
T |
|
| Q |
357 |
gttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatctgagagttggtttaagaagacctcaacaaccaactggtcccttccta |
456 |
Q |
| |
|
|| ||||||||||||||||| ||||| | | |||||| ||||||| ||||||| |||| ||||||| ||||||| ||||||||||||||| ||||| || |
|
|
| T |
45467794 |
gtcgtgggacaagaccaagcggttaatgctgttgctgaggctgtattgagatc-aagagctggtttaggaagaccccaacaaccaactggttccttctta |
45467892 |
T |
|
| Q |
457 |
ttccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcgg |
556 |
Q |
| |
|
||||||||||| | ||||||||||||||| || ||||| ||||||||||| | | || |||| |||||||||||| || | ||| |||||||||||| |
|
|
| T |
45467893 |
ttccttggtccgactggtgttggtaaaactgagcttgcaaaggctcttgcagagcagctatttgatgatgaaaatcagttggtgagaattgacatgtcgg |
45467992 |
T |
|
| Q |
557 |
aatacatggaaaaagactc--tatcaagattgattggtgcaacacc |
600 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||| |||| |
|
|
| T |
45467993 |
aatacatggaacaacactctgtatcaagattgattggtgcaccacc |
45468038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 45467431 - 45467561
Alignment:
| Q |
29 |
agagacaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaa--acatacgtgaagagctcctctttg |
126 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
45467431 |
agagacaagcttcaacctctgaagatgaagtatagtaaagagaaagagaggattgatgagattcgaaggctgaagcagaaacgtgaagagctcctctttg |
45467530 |
T |
|
| Q |
127 |
cactacaggaggctgagaggtggtatgatct |
157 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |
|
|
| T |
45467531 |
cactacaggaggcagagaggcggtatgatct |
45467561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 221 - 600
Target Start/End: Complemental strand, 42450229 - 42449849
Alignment:
| Q |
221 |
cttgatgctgacagaaactgttggaccagaccatatagctaaggttgttagccgatggaccggtacaccggtgactcgtct-agtgcaaaatgataaaga |
319 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||| |||| | ||||||||||| || ||| |||| ||| ||| | || || |||| ||||||| ||||| |
|
|
| T |
42450229 |
cttgatgttgacaaaaactgttgaaccagacctaataggtttggttgttagcctattgacgggtataccagtgtcccgacttagtg-aaaatgagaaaga |
42450131 |
T |
|
| Q |
320 |
aaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatctgagagttgg |
419 |
Q |
| |
|
|||||| ||||||||||||||| || |||| ||||| ||||||||||| || ||||| || | ||||| ||||| |||| | ||||||||| |
|
|
| T |
42450130 |
aaggtttcttggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaacactgtattgagg-cggagagttgg |
42450032 |
T |
|
| Q |
420 |
tttaagaagacctcaacaaccaactggtcccttcctattccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactcttt |
519 |
Q |
| |
|
|||| ||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
42450031 |
tttaggaagacctcaacatccaattggttccttcctattccttggtccaactggtgttggtaaaacagaacttgctaaggctcttgctgagcaactattt |
42449932 |
T |
|
| Q |
520 |
gctgatgaaaatcatatgattagacttgacatgtcggaatacatggaaaaagac--tctatcaagattgattggtgcaacacc |
600 |
Q |
| |
|
| |||||||||||| || | ||| | |||||||||| ||||||||| || || ||| ||||||||||||| |||| |||| |
|
|
| T |
42449931 |
gatgatgaaaatcagttggtgagaatgaacatgtcggagtacatggaacaacactatctgtcaagattgattgatgcagcacc |
42449849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 567
Target Start/End: Complemental strand, 742887 - 742628
Alignment:
| Q |
307 |
aaaatgataaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgag |
406 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||| ||||| | |||||||||||||||||| |||||||| || | ||||| |||||| | || |
|
|
| T |
742887 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcataatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaag |
742788 |
T |
|
| Q |
407 |
atctgagagttggtttaagaagacctcaacaaccaactggtcccttcctattccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgc |
506 |
Q |
| |
|
| ||||| ||||| | ||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
742787 |
gtg-gagagctggttcaggaagacctcaacatccaattggttccttcctattccttggtccaactggtgttggtaaaacagaacttgctaaagctcttgc |
742689 |
T |
|
| Q |
507 |
tcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaatacatggaa |
567 |
Q |
| |
|
| || ||||||||| ||||||||| || || | ||| | |||||||||| ||||||||| |
|
|
| T |
742688 |
tgaacaactctttgatgatgaaaaccagttggtgagaatgaacatgtcggagtacatggaa |
742628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 42450408 - 42450316
Alignment:
| Q |
65 |
aaagagaaagagaggattgatgagattcgaaggctgaa--acatacgtgaagagctcctctttgcactacaggaggctgagaggtggtatgat |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| | | |||||||||||| |||| | |||||||||||||||||| || ||||| |
|
|
| T |
42450408 |
aaagagaaagtgaggattgatgagattcaaaggctgaagcagaaacgtgaagagcttatcttgtctctacaggaggctgagaggcggaatgat |
42450316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 308 - 567
Target Start/End: Complemental strand, 43064913 - 43064658
Alignment:
| Q |
308 |
aaatgataaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgaga |
407 |
Q |
| |
|
|||||| |||||||| ||| |||||||| |||| | ||||||||| ||||| |||||| ||||| || |||| ||| |||||| ||||||| ||||| |
|
|
| T |
43064913 |
aaatgagaaagaaagattgattggactttgtgatagattgcacag---agttgcaggacaataccaaacaattaatgttcttgctgaggctgtattgaga |
43064817 |
T |
|
| Q |
408 |
tctgagagttggtttaagaagacctcaacaaccaactggtcccttcctattccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgct |
507 |
Q |
| |
|
|| |||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
43064816 |
tca-agagctggtttaggaagagctcaacaaccaacatgtcccttcctattccttggtccaattggtgttggtaaaactgaacttgcaatggctcttgca |
43064718 |
T |
|
| Q |
508 |
caataactctttgctgatgaaaatcatatgattagacttgacatgtcggaatacatggaa |
567 |
Q |
| |
|
|| |||| ||| ||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
43064717 |
gaacaacttcttgatgatgaaaatcggttagttagaattgacatgtcggaatacatggaa |
43064658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 567
Target Start/End: Original strand, 43065079 - 43065189
Alignment:
| Q |
457 |
ttccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcgg |
556 |
Q |
| |
|
|||||| |||||| ||||||||||||||| | |||||| |||||||||| || |||| |||| ||||||||||| | | ||| || ||||||||| |
|
|
| T |
43065079 |
ttcctttgtccaactggtgttggtaaaactggacttgcaaaggctcttgtggaacaactttttgatgatgaaaatcggttagtgagaattaacatgtcgg |
43065178 |
T |
|
| Q |
557 |
aatacatggaa |
567 |
Q |
| |
|
||||||||||| |
|
|
| T |
43065179 |
aatacatggaa |
43065189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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