View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2824_low_4 (Length: 344)
Name: NF2824_low_4
Description: NF2824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2824_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 3702992 - 3702651
Alignment:
| Q |
1 |
aagtgtatataattgagttacaactctgaatctaaccatacatcatatcttatacaaagccacttcaacattatgtaaataaa----caaacagcaaaaa |
96 |
Q |
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| T |
3702992 |
aagtgtatataattgagttacaactctgaatctaaccatacatcttatcttatacaaagccacatcaacattatgtaaataaataaacaaacagcaaaaa |
3702893 |
T |
|
| Q |
97 |
ataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3702892 |
ataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgct |
3702793 |
T |
|
| Q |
197 |
aaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatat |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702792 |
aaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatat |
3702693 |
T |
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| Q |
297 |
caaccataagttcaggatccattttctcgcctttcatctcac |
338 |
Q |
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| T |
3702692 |
caaccataagttcaggatccattttctcacctttcatctcac |
3702651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 338
Target Start/End: Complemental strand, 3699231 - 3698963
Alignment:
| Q |
66 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
165 |
Q |
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| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
166 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
265 |
Q |
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||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
3699036 |
T |
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| Q |
266 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcac |
338 |
Q |
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| T |
3699035 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcac |
3698963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
38 |
atacatcatatcttatacaaagccacttcaaca |
70 |
Q |
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| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
269 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
324 |
Q |
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||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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