View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2825_high_5 (Length: 447)
Name: NF2825_high_5
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2825_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 2665012 - 2665425
Alignment:
| Q |
19 |
aatttgcttataccatattccaagataagtgtaagtggaatttttaggtgtaaagaaaccaagttcaaaattttgtgaaggtgaaattagtgtttggtta |
118 |
Q |
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| T |
2665012 |
aatttgcttataccatattccaagataagtgtaagtggaatttttaggtgtaaagaaaccaagttcaaaattttgtgaaggtgaaattagtgtttggtta |
2665111 |
T |
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| Q |
119 |
ccagtgatgaattgcggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagaaga |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2665112 |
ccagtgatgaattgtggtggagttatggtatcttctgcttttgaaggtattggaaacaatgttgttaaatggaaacaagtagcaagaagtagaaagatga |
2665211 |
T |
|
| Q |
219 |
actcagttttctccatgattagttttttatccttcacnnnnnnnnnnnnnnnnnnngtacttatataaagaaaatctgcattatttaatcatactactgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2665212 |
actcagttttctccatgattagttttttatccttcacattattattattattattagtacttatataaagaaaatctgcattatttaatcatactactgt |
2665311 |
T |
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| Q |
319 |
tcttaaaatcttgtgttgatgaataggagtttaattgactggtttatcttaaattaagcaaaagaattgtttaattgggagtaggtgtgtatcttgaggg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2665312 |
tcttaaaatcttgtgttgatgaataggagtttaattgaccagtttaacttaaattaagcaaaagaattgtataattgggagtaggtgtgtatcttgaggg |
2665411 |
T |
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| Q |
419 |
tccagttctttttc |
432 |
Q |
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|||||||||||||| |
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| T |
2665412 |
tccagttctttttc |
2665425 |
T |
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