View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2825_high_6 (Length: 426)

Name: NF2825_high_6
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2825_high_6
NF2825_high_6
[»] chr1 (5 HSPs)
chr1 (14-397)||(51034870-51035257)
chr1 (26-179)||(51068925-51069078)
chr1 (14-205)||(51030592-51030783)
chr1 (14-205)||(51063344-51063535)
chr1 (26-176)||(40617906-40618056)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 51034870 - 51035257
Alignment:
Q  14 cacagacattgtctttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaat 113  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51034870 cacaaacattgtttttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttctat 51034969  T
Q  114 gataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaaaacaaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51034970 gataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgctagctctttatctgtaaaacaaatt 51035069  T
Q  214 gaatgaaatggaaatttatttcattttcaaagttgaaaccaatgatttaaaaattaggttaaatcgaaccaagttggaccataattggttcatttgaann 313  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  51035070 gagtgaaatggaaatttatttcattttcaaagttgaaaccaatgatttaaaaattaggttaaatcgaaccaagttggaccataattggttcgtttgaatt 51035169  T
Q  314 nnnnnaatacttg----tcatcacatggnnnnnnnnnnnnnaatttggatacgcaaaagaaaaagggtattcgattcaattcaattca 397  Q
         ||||||||    |||||||||||             ||||||||||||||||||||||||||||||| |||||||||||||||    
T  51035170 tttgtaatacttgtagctcatcacatggtttttcattttttaatttggatacgcaaaagaaaaagggtattcaattcaattcaattca 51035257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 51068925 - 51069078
Alignment:
Q  26 ctttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaac 125  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||| |||||| || ||||    
T  51068925 ctttactaatatttcccattataagctcccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttttctatgatagatataac 51069024  T
Q  126 ataacttggaatctcctctagcttgcttaacacatattgttttagtttagcagg 179  Q
    || |||||| || | |||||||||| ||||||||||||| || |||||||||||    
T  51069025 attacttggcatattctctagcttgtttaacacatattgcttcagtttagcagg 51069078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 51030592 - 51030783
Alignment:
Q  14 cacagacattgtctttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaat 113  Q
    |||| |||||| |||||||||| |||||||| || || |||||||||||||||| ||||||||||||||| || || |||||||| |  |||||||| ||    
T  51030592 cacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat 51030691  T
Q  114 gataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaa 205  Q
    || |  | |||||| |||||| |||| ||||| |||| ||||||||||||||||||| |||||||| || | ||| ||||||||||||||||    
T  51030692 gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa 51030783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 51063344 - 51063535
Alignment:
Q  14 cacagacattgtctttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaat 113  Q
    |||| |||||| |||||||||| |||||||| || || |||||||||||||||| ||||||||||||||| || || |||||||| |  |||||||| ||    
T  51063344 cacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat 51063443  T
Q  114 gataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaa 205  Q
    || |  | |||||| |||||| |||| ||||| |||| ||||||||||||||||||| |||||||| || | ||| ||||||||||||||||    
T  51063444 gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa 51063535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 40618056 - 40617906
Alignment:
Q  26 ctttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaac 125  Q
    |||| ||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||  | ||||||||| |||| | |||||||    
T  40618056 ctttgctaatatttcccattatgagctcccatggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctatgaaagatctaac 40617957  T
Q  126 ataacttggaatctcctctagcttgcttaacacatattgttttagtttagc 176  Q
    || |||||| || | ||||| |||  |||| ||||||| ||| ||||||||    
T  40617956 atcacttggcattttctctaacttctttaatacatattctttcagtttagc 40617906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University