View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2825_high_8 (Length: 216)

Name: NF2825_high_8
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2825_high_8
NF2825_high_8
[»] chr1 (20 HSPs)
chr1 (1-206)||(45526180-45526385)
chr1 (4-206)||(35216950-35217151)
chr1 (4-184)||(35206425-35206604)
chr1 (12-206)||(35213561-35213754)
chr1 (31-206)||(35145206-35145379)
chr1 (88-204)||(45534386-45534503)
chr1 (117-206)||(35203159-35203248)
chr1 (117-206)||(35476973-35477062)
chr1 (118-205)||(35192820-35192907)
chr1 (111-201)||(35295186-35295276)
chr1 (119-184)||(8640315-8640380)
chr1 (114-206)||(35222767-35222859)
chr1 (114-183)||(35272922-35272991)
chr1 (115-202)||(35228427-35228514)
chr1 (113-166)||(35253954-35254007)
chr1 (122-183)||(35265360-35265421)
chr1 (114-193)||(35249599-35249678)
chr1 (138-184)||(19267381-19267427)
chr1 (114-184)||(43638094-43638165)
chr1 (11-91)||(35194749-35194832)
[»] chr2 (1 HSPs)
chr2 (114-184)||(33137636-33137706)
[»] chr3 (4 HSPs)
chr3 (114-184)||(17663857-17663927)
chr3 (114-184)||(19246358-19246428)
chr3 (115-184)||(898918-898987)
chr3 (114-177)||(53921108-53921171)
[»] chr7 (2 HSPs)
chr7 (137-184)||(38635327-38635374)
chr7 (137-184)||(38633580-38633627)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45526385 - 45526180
Alignment:
Q  1 actatgcatatattttctacagttacatacaatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataag 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45526385 actatgcatatgttttctacagttacatacaatgctcaattgattgttgtaaaatatatggttattttttaaatgcttagttcagaatgctaatcataag 45526286  T
Q  101 ccttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45526285 ccttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattatttggggtg 45526186  T
Q  201 atgatg 206  Q
    ||||||    
T  45526185 atgatg 45526180  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 35217151 - 35216950
Alignment:
Q  4 atgcatatattttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagcc 102  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||| |||| ||||||||| ||||||     
T  35217151 atgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagct 35217052  T
Q  103 ttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgat 202  Q
    ||  ||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| |||| ||||||    
T  35217051 tt--ggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctccattgcttgcggtgat 35216954  T
Q  203 gatg 206  Q
    ||||    
T  35216953 gatg 35216950  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 35206604 - 35206425
Alignment:
Q  4 atgcatatattttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagcc 102  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||| |||| ||||||||| ||||||     
T  35206604 atgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagct 35206505  T
Q  103 ttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||  ||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35206504 tt--ggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 35213754 - 35213561
Alignment:
Q  12 attttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagccttctgggt 110  Q
    ||||||||||  ||||||| |||||||| ||||||||| |||||||||| || |||||| |||||||||||||||||||||||| |||| | ||  ||      
T  35213754 attttctacatctacatacgaatgctcagttgattgttataaaatatattgtgatttttgaaatgcttagttcagaatgctaataataaacttt--ggaa 35213657  T
Q  111 atattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||  |||| |||||||||||||||    
T  35213656 atattgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctcggcattgcttggggtgatgatg 35213561  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 35145379 - 35145206
Alignment:
Q  31 aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagccttctgggtatattgaaatgcagagcttt 130  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||| ||  ||  ||||||||||||| ||||||    
T  35145379 aatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaataataagcttt--ggaaatattgaaatgcaaagcttt 35145282  T
Q  131 caattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||  |||| ||||| |||||||||    
T  35145281 caattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggagtgatgatg 35145206  T

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Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 45534503 - 45534386
Alignment:
Q  88 tgctaatcataagccttctgggtatattgaaa-tgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctcca 186  Q
    ||||||| ||||||||| ||||| |||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||      
T  45534503 tgctaataataagccttttgggtttattgaaaatgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgc 45534404  T
Q  187 cattacttggggtgatga 204  Q
    ||||||||||||||||||    
T  45534403 cattacttggggtgatga 45534386  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 35203248 - 35203159
Alignment:
Q  117 aaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||    
T  35203248 aaatgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttggggtaatgatg 35203159  T

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Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 35477062 - 35476973
Alignment:
Q  117 aaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  35477062 aaatgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatg 35476973  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 35192907 - 35192820
Alignment:
Q  118 aatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgat 205  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  |||| ||||||||||||||    
T  35192907 aatgtagagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 35192820  T

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Target: chr1; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 35295186 - 35295276
Alignment:
Q  111 atattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtga 201  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||   |||| |||||||||    
T  35295186 atattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtga 35295276  T

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Target: chr1; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 8640380 - 8640315
Alignment:
Q  119 atgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8640380 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

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Target: chr1; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 35222859 - 35222767
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||  ||||| ||||||||    
T  35222859 ttgaaattaagagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctcgacattgattgggatgatgatg 35222767  T

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Target: chr1; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 35272991 - 35272922
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 183  Q
    |||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  35272991 ttgaaatgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

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Target: chr1; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 35228514 - 35228427
Alignment:
Q  115 tgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgat 202  Q
    ||||||| |||| ||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||   ||||||||||||||||    
T  35228514 tgaaatgtagagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctcttgccattacttggggtgat 35228427  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 35254007 - 35253954
Alignment:
Q  113 attgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatg 166  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  35254007 attgaaatgcagagttttcaattggatagaaagagtggaaaaaattgttacatg 35253954  T

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Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 35265421 - 35265360
Alignment:
Q  122 cagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 183  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  35265421 cagagtttccaattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 35249678 - 35249599
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattact 193  Q
    |||||||| |||||||||||||||||| ||||||||||||| | ||||||| | || ||||||||| |||| || |||||    
T  35249678 ttgaaatgtagagctttcaattggataaaaagagtggaaaagactgttacacgttttctgctagatttctcgactttact 35249599  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 19267381 - 19267427
Alignment:
Q  138 atagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||    
T  19267381 atagaaataatggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 43638094 - 43638165
Alignment:
Q  114 ttgaaatgcagagctttcaattggatag-aaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    |||||||||||||||||||||| ||||| ||| |||||||||   ||||||||| || ||||||||| ||||    
T  43638094 ttgaaatgcagagctttcaatttgatagaaaatagtggaaaattttgttacatgatttctgctagatttctc 43638165  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 35194832 - 35194749
Alignment:
Q  11 tattttctacagttacatac-aatgctcaattgattgttgtaaaat--atatggtcattttttaaatgcttagttcagaatgct 91  Q
    |||||| ||||| | ||||| |||||||||||||||| ||||||||  |||| || |||||| | ||| |||||||||||||||    
T  35194832 tattttttacagcttcatacgaatgctcaattgattgatgtaaaatatatattgtgatttttgatatgtttagttcagaatgct 35194749  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 33137636 - 33137706
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  33137636 ttgaaatgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctc 33137706  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 17663857 - 17663927
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  17663857 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 17663927  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 19246358 - 19246428
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  19246358 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 19246428  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 898918 - 898987
Alignment:
Q  115 tgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    |||||| ||||||||| |||||||||| || ||||||||||  ||||||||||||||||| |||||||||    
T  898918 tgaaattcagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctc 898987  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 53921108 - 53921171
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctag 177  Q
    ||||||||||||   |||||||||||||||||||||| ||||| |||| ||||||| |||||||    
T  53921108 ttgaaatgcagattattcaattggatagaaagagtgggaaaaaatgttgcatgctttctgctag 53921171  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38635374 - 38635327
Alignment:
Q  137 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  38635374 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38633627 - 38633580
Alignment:
Q  137 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  38633627 gatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 38633580  T

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