View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2825_low_1 (Length: 800)
Name: NF2825_low_1
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2825_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 161 - 791
Target Start/End: Complemental strand, 46069952 - 46069320
Alignment:
| Q |
161 |
cataggagactggatgactgtagggctattgctgcgagatttatgaatatgtatggctgctgtcagaatttagaagtgtctcaaattgctgctggtggtc |
260 |
Q |
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| T |
46069952 |
cataggagactggatgactgtagggctattgctgcgagatttatgaatatgtatggctgctgtcagaatttagaagtgtctcaaattgctgctggtggtc |
46069853 |
T |
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| Q |
261 |
aaattttttggtgcagtccacttgttgaaaactcttggttctggtttttgtgatgctcgattgtgatggggcggtgtgcaacttggggtataatgttgcg |
360 |
Q |
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| T |
46069852 |
aaattttttggtgcagtccacttgttgaaaactcttggttctggtttttgtgatgctcgattgtgatgggacggtgtgcaacttggggtataatgttgcg |
46069753 |
T |
|
| Q |
361 |
gtcgagtgtattttgagaagctcg-attatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaaggtaat |
459 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46069752 |
gtcgagtgtattttgagaagctcggattatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaagttaat |
46069653 |
T |
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| Q |
460 |
aacaagacatttttggtggtttcagactttgtgtcggttgttcaacttgtgaagatggggacgaggaatcaacatcctctttaaaagtttgtatgggaaa |
559 |
Q |
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| T |
46069652 |
aacaagaaatttttggtggtttcagactttgtgtcggttgttcaacttgtgaatatggggacgaggaatcaacatcctctttacaagtttgtatgggaaa |
46069553 |
T |
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| Q |
560 |
gcttgtaggactccttgtttggaaatgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaattt |
659 |
Q |
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| T |
46069552 |
gcttgtaggactccttgtttggaaatgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaattt |
46069453 |
T |
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| Q |
660 |
ggaggttgaagtattaatgaatgagatgtaataagtgggaatttaagattcagataataatttttacaaatta-tagagtatttcgggaaagaagattaa |
758 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
46069452 |
ggagattgaagtattaatcaatgagatgtaataagtgggaatttaagattcagataataatttttacaaattattagagtatttcggggaagaagatcaa |
46069353 |
T |
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| Q |
759 |
tcctaattcaaaattttgggaaagatgatgatg |
791 |
Q |
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| T |
46069352 |
tcctaattcaaaattttgggaaagatgatgatg |
46069320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 46072090 - 46071942
Alignment:
| Q |
17 |
aattttagcttacaatcgttggttaaattgaaaaggacacgcattatctcaatcaaattctcatgattttagccggactatttgcataactgtgatactc |
116 |
Q |
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| T |
46072090 |
aattttagcttacaatcgttggttaaattgaaaaggacacgcattatctcaatcaaattctcatgattttagccggactatttgcataactgtgatcgtc |
46071991 |
T |
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| Q |
117 |
taagagcatcaaatataatcgtgatactcaatgaggtggtgttccatag |
165 |
Q |
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| T |
46071990 |
taagagcatcaaatataatcgtgatactcaatgaggtggtgttccatag |
46071942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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