View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2825_low_10 (Length: 216)

Name: NF2825_low_10
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2825_low_10
NF2825_low_10
[»] chr1 (20 HSPs)
chr1 (1-206)||(45526180-45526385)
chr1 (4-206)||(35216950-35217151)
chr1 (4-184)||(35206425-35206604)
chr1 (12-206)||(35213561-35213754)
chr1 (31-206)||(35145206-35145379)
chr1 (88-204)||(45534386-45534503)
chr1 (117-206)||(35203159-35203248)
chr1 (117-206)||(35476973-35477062)
chr1 (118-205)||(35192820-35192907)
chr1 (111-201)||(35295186-35295276)
chr1 (119-184)||(8640315-8640380)
chr1 (114-206)||(35222767-35222859)
chr1 (114-183)||(35272922-35272991)
chr1 (115-202)||(35228427-35228514)
chr1 (113-166)||(35253954-35254007)
chr1 (122-183)||(35265360-35265421)
chr1 (114-193)||(35249599-35249678)
chr1 (138-184)||(19267381-19267427)
chr1 (114-184)||(43638094-43638165)
chr1 (11-91)||(35194749-35194832)
[»] chr2 (1 HSPs)
chr2 (114-184)||(33137636-33137706)
[»] chr3 (4 HSPs)
chr3 (114-184)||(17663857-17663927)
chr3 (114-184)||(19246358-19246428)
chr3 (115-184)||(898918-898987)
chr3 (114-177)||(53921108-53921171)
[»] chr7 (2 HSPs)
chr7 (137-184)||(38635327-38635374)
chr7 (137-184)||(38633580-38633627)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45526385 - 45526180
Alignment:
Q  1 actatgcatatattttctacagttacatacaatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataag 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45526385 actatgcatatgttttctacagttacatacaatgctcaattgattgttgtaaaatatatggttattttttaaatgcttagttcagaatgctaatcataag 45526286  T
Q  101 ccttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45526285 ccttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattatttggggtg 45526186  T
Q  201 atgatg 206  Q
    ||||||    
T  45526185 atgatg 45526180  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 35217151 - 35216950
Alignment:
Q  4 atgcatatattttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagcc 102  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||| |||| ||||||||| ||||||     
T  35217151 atgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagct 35217052  T
Q  103 ttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgat 202  Q
    ||  ||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| |||| ||||||    
T  35217051 tt--ggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctccattgcttgcggtgat 35216954  T
Q  203 gatg 206  Q
    ||||    
T  35216953 gatg 35216950  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 35206604 - 35206425
Alignment:
Q  4 atgcatatattttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagcc 102  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||| |||| ||||||||| ||||||     
T  35206604 atgcaaatattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagct 35206505  T
Q  103 ttctgggtatattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||  ||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35206504 tt--ggaaatattgaaatgcagagtttccaattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 35213754 - 35213561
Alignment:
Q  12 attttctacagttacatac-aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagccttctgggt 110  Q
    ||||||||||  ||||||| |||||||| ||||||||| |||||||||| || |||||| |||||||||||||||||||||||| |||| | ||  ||      
T  35213754 attttctacatctacatacgaatgctcagttgattgttataaaatatattgtgatttttgaaatgcttagttcagaatgctaataataaacttt--ggaa 35213657  T
Q  111 atattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||  |||| |||||||||||||||    
T  35213656 atattgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctcggcattgcttggggtgatgatg 35213561  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 35145379 - 35145206
Alignment:
Q  31 aatgctcaattgattgttgtaaaatatatggtcattttttaaatgcttagttcagaatgctaatcataagccttctgggtatattgaaatgcagagcttt 130  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||| ||  ||  ||||||||||||| ||||||    
T  35145379 aatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaataataagcttt--ggaaatattgaaatgcaaagcttt 35145282  T
Q  131 caattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||  |||| ||||| |||||||||    
T  35145281 caattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggagtgatgatg 35145206  T

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Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 45534503 - 45534386
Alignment:
Q  88 tgctaatcataagccttctgggtatattgaaa-tgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctcca 186  Q
    ||||||| ||||||||| ||||| |||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||      
T  45534503 tgctaataataagccttttgggtttattgaaaatgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgc 45534404  T
Q  187 cattacttggggtgatga 204  Q
    ||||||||||||||||||    
T  45534403 cattacttggggtgatga 45534386  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 35203248 - 35203159
Alignment:
Q  117 aaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||    
T  35203248 aaatgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttggggtaatgatg 35203159  T

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Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 35477062 - 35476973
Alignment:
Q  117 aaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  35477062 aaatgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatg 35476973  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 35192907 - 35192820
Alignment:
Q  118 aatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgat 205  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  |||| ||||||||||||||    
T  35192907 aatgtagagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 35192820  T

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Target: chr1; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 35295186 - 35295276
Alignment:
Q  111 atattgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtga 201  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||   |||| |||||||||    
T  35295186 atattgaaatgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtga 35295276  T

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Target: chr1; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 8640380 - 8640315
Alignment:
Q  119 atgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8640380 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

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Target: chr1; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 35222859 - 35222767
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgatgatg 206  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||  ||||| ||||||||    
T  35222859 ttgaaattaagagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctcgacattgattgggatgatgatg 35222767  T

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Target: chr1; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 35272991 - 35272922
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 183  Q
    |||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  35272991 ttgaaatgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

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Target: chr1; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 35228514 - 35228427
Alignment:
Q  115 tgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattacttggggtgat 202  Q
    ||||||| |||| ||||||||||| |||||||||||||| |||||||| |||||| |||||||||||||   ||||||||||||||||    
T  35228514 tgaaatgtagagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctcttgccattacttggggtgat 35228427  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 35254007 - 35253954
Alignment:
Q  113 attgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatg 166  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  35254007 attgaaatgcagagttttcaattggatagaaagagtggaaaaaattgttacatg 35253954  T

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Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 35265421 - 35265360
Alignment:
Q  122 cagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 183  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  35265421 cagagtttccaattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 35249678 - 35249599
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattact 193  Q
    |||||||| |||||||||||||||||| ||||||||||||| | ||||||| | || ||||||||| |||| || |||||    
T  35249678 ttgaaatgtagagctttcaattggataaaaagagtggaaaagactgttacacgttttctgctagatttctcgactttact 35249599  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 19267381 - 19267427
Alignment:
Q  138 atagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||    
T  19267381 atagaaataatggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 43638094 - 43638165
Alignment:
Q  114 ttgaaatgcagagctttcaattggatag-aaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    |||||||||||||||||||||| ||||| ||| |||||||||   ||||||||| || ||||||||| ||||    
T  43638094 ttgaaatgcagagctttcaatttgatagaaaatagtggaaaattttgttacatgatttctgctagatttctc 43638165  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 35194832 - 35194749
Alignment:
Q  11 tattttctacagttacatac-aatgctcaattgattgttgtaaaat--atatggtcattttttaaatgcttagttcagaatgct 91  Q
    |||||| ||||| | ||||| |||||||||||||||| ||||||||  |||| || |||||| | ||| |||||||||||||||    
T  35194832 tattttttacagcttcatacgaatgctcaattgattgatgtaaaatatatattgtgatttttgatatgtttagttcagaatgct 35194749  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 33137636 - 33137706
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  33137636 ttgaaatgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctc 33137706  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 17663857 - 17663927
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  17663857 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 17663927  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 19246358 - 19246428
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  19246358 ttgaaatgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 19246428  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 898918 - 898987
Alignment:
Q  115 tgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    |||||| ||||||||| |||||||||| || ||||||||||  ||||||||||||||||| |||||||||    
T  898918 tgaaattcagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctc 898987  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 53921108 - 53921171
Alignment:
Q  114 ttgaaatgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctag 177  Q
    ||||||||||||   |||||||||||||||||||||| ||||| |||| ||||||| |||||||    
T  53921108 ttgaaatgcagattattcaattggatagaaagagtgggaaaaaatgttgcatgctttctgctag 53921171  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38635374 - 38635327
Alignment:
Q  137 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  38635374 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38633627 - 38633580
Alignment:
Q  137 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 184  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  38633627 gatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 38633580  T

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