View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2825_low_3 (Length: 595)
Name: NF2825_low_3
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2825_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 44911736 - 44911625
Alignment:
| Q |
15 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttgataaacatgatgatgcttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44911736 |
agatgaatggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgtcatggtgtgaaataattttgataaacatgatgatgcttt |
44911637 |
T |
|
| Q |
115 |
gaaagcataggc |
126 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44911636 |
gaaagcataggc |
44911625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3769095 - 3769176
Alignment:
| Q |
15 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3769095 |
agatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtgatggtgtgaaataattttga |
3769176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 37844896 - 37844844
Alignment:
| Q |
302 |
cttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagtca |
353 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||||||| ||||||||| |
|
|
| T |
37844896 |
cttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtca |
37844844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3928622 - 3928541
Alignment:
| Q |
15 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
96 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3928622 |
agatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
3928541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 6353972 - 6353891
Alignment:
| Q |
15 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6353972 |
agatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctctctgatggtgtgaaataattttga |
6353891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 24936214 - 24936260
Alignment:
| Q |
305 |
aagtgcttatagcataaatgcttatttagaagtgtttatgtataagt |
351 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||| |||||||||||| |
|
|
| T |
24936214 |
aagtgcttatagcataaaggcttatatataagtggttatgtataagt |
24936260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 30372873 - 30372929
Alignment:
| Q |
15 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct |
71 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
30372873 |
agatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct |
30372929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 1431492 - 1431428
Alignment:
| Q |
288 |
ttttggataaataacttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagt |
351 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
1431492 |
ttttggataaacaacttaagttcttatagcataagtgcttatcatataagtgtttatgtataagt |
1431428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 27481481 - 27481415
Alignment:
| Q |
289 |
tttggataaataacttaa----gtgcttatagcataaatgcttatt-tagaagtgtttatgtataag |
350 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
27481481 |
tttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataag |
27481415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 32417295 - 32417255
Alignment:
| Q |
304 |
taagtgcttatagcataaatgcttatttagaagtgtttatg |
344 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
32417295 |
taagtgcttatagtataaatgcttatatataagtgtttatg |
32417255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 36501298 - 36501377
Alignment:
| Q |
16 |
gatgaatggcatgaacggtaaa-ttggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttg |
95 |
Q |
| |
|
||||||||||||||| | |||| ||||| |||||| ||||||| ||| |||| |||| || ||||||||||||| |||||| |
|
|
| T |
36501298 |
gatgaatggcatgaaggataaagttgga-gttttagggtagttgaatccctggccctttgcgatggtgtgaaatgattttg |
36501377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University