View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2825_low_7 (Length: 328)

Name: NF2825_low_7
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2825_low_7
NF2825_low_7
[»] chr3 (8 HSPs)
chr3 (139-312)||(3262404-3262578)
chr3 (1-100)||(3262269-3262367)
chr3 (28-98)||(30993281-30993352)
chr3 (48-100)||(24177926-24177978)
chr3 (48-100)||(18534485-18534536)
chr3 (41-94)||(32657257-32657309)
chr3 (1-100)||(3593049-3593148)
chr3 (48-100)||(18705588-18705639)
[»] scaffold0094 (1 HSPs)
scaffold0094 (41-99)||(48232-48290)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-97)||(35507-35604)
[»] scaffold0281 (1 HSPs)
scaffold0281 (1-100)||(1821-1920)
[»] chr8 (2 HSPs)
chr8 (41-100)||(17290600-17290659)
chr8 (62-97)||(6465669-6465704)
[»] chr1 (2 HSPs)
chr1 (40-97)||(18513877-18513934)
chr1 (1-77)||(12786235-12786313)
[»] chr7 (2 HSPs)
chr7 (43-100)||(16250380-16250437)
chr7 (1-96)||(32945329-32945423)
[»] scaffold0323 (1 HSPs)
scaffold0323 (41-100)||(16222-16281)
[»] chr6 (1 HSPs)
chr6 (47-98)||(19566945-19566996)
[»] chr5 (1 HSPs)
chr5 (1-93)||(39435975-39436066)
[»] chr2 (1 HSPs)
chr2 (41-90)||(16093511-16093560)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 139 - 312
Target Start/End: Original strand, 3262404 - 3262578
Alignment:
Q  139 atgaattcatgtcaaattcatgctctaatttgatgttgtgatttaaattaatgaaaacctaacattggggattttatgaaaatcaaataattacatgtgt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3262404 atgaattcatgtcaaattcatgctctaatttgatgttgtgatttaaattaatgaaaacctaacattggggattttatgaaaatcaaataattacatgtgt 3262503  T
Q  239 tgttcgattacc-cttcactaagttattgatgttaactacatatattaattttaaatacataaattagtatttat 312  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3262504 tgttcgattacctcttcactaagttattgatgttaactacatatattaattttaaatacataaattagtatttat 3262578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3262269 - 3262367
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaactaaggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3262269 agagatttcatcgtaggaaatcattagattctataaactaaggtaagggag-cgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 3262367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 30993281 - 30993352
Alignment:
Q  28 attctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaag 98  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  30993281 attctccaaactagaggtaaggggggagtctctattcaccataagggttgtatgaacatatgggtagggaag 30993352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 24177926 - 24177978
Alignment:
Q  48 gggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  24177926 gggggagtctctattcaccataaggattctatgaacatatgggtagtgaaggg 24177978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 18534485 - 18534536
Alignment:
Q  48 gggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18534485 gggggagtctctattcaccataaggattgtatgaacatat-ggtagtgaaggg 18534536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 32657257 - 32657309
Alignment:
Q  41 aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagt 94  Q
    ||||||||| || |||||||||||| |||||| |||||||||||||||||||||    
T  32657257 aggtaagggaggagtctctattcac-ataagggttgtatgaacatatgggtagt 32657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3593148 - 3593049
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaagg 99  Q
    |||||||||  ||||||||||||| | ||||  ||||||| |||||||||| | ||||||||||| ||||||| |||||||| |||| | |||||| |||    
T  3593148 agagatttctccgtaggaaatcatca-attcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgcagg 3593050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 18705588 - 18705639
Alignment:
Q  48 gggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    ||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  18705588 gggggagtctctatttaccataagg-ttgtatgaacataagggtagtgaaggg 18705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 48290 - 48232
Alignment:
Q  41 aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaagg 99  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  48290 aggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaagg 48232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35507 - 35604
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaa 97  Q
    |||||||||| |||||||| |||| | |||| |||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||||||||||||||    
T  35507 agagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattcagcgtaagggttgtatcaacatatgggtagtgaa 35604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1920 - 1821
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaagg 99  Q
    |||||||||| ||||||||||||| | ||||| ||||||| ||||| |||||| ||||||||| ||||||||| ||||||||| |||| ||||| |||||    
T  1920 agagatttcaccgtaggaaatcatca-attctgcaaactagaggtatggggggagtctctatttaccataagggttgtatgaatatataggtagcgaagg 1822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 17290659 - 17290600
Alignment:
Q  41 aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  17290659 aggtaaggggggagtctctattcaccataagggttgtatgaatatatgggttgtgaaggg 17290600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 6465704 - 6465669
Alignment:
Q  62 tcaccataaggattgtatgaacatatgggtagtgaa 97  Q
    |||||||||||||||||||||||| |||||||||||    
T  6465704 tcaccataaggattgtatgaacatgtgggtagtgaa 6465669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 18513877 - 18513934
Alignment:
Q  40 aaggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaa 97  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||    
T  18513877 aaggtaagggggaagtctctattcaccataagggttgtatgaacatataggtagtgaa 18513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12786313 - 12786235
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaa-ggggggcgtctctattcaccataaggattgt 77  Q
    |||||||||| |||||||| |||| | ||||| ||||||| |||||| |||||| ||||||||||| ||||||| ||||    
T  12786313 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttgt 12786235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 16250380 - 16250437
Alignment:
Q  43 gtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    |||||||||| ||||||||||| ||||||| |||||||||||| ||||||| ||||||    
T  16250380 gtaaggggggagtctctattcatcataagggttgtatgaacatgtgggtagcgaaggg 16250437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32945423 - 32945329
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtga 96  Q
    |||||||||| ||||||||||||| |  |||   |||||| |||||||||||| || | |||||| ||||||| |||||||||||||||||||||||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt-tatattcatcataagg-ttgtatgaacatatgggtagtga 32945329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 16281 - 16222
Alignment:
Q  41 aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 100  Q
    |||||||||||  |||||||||||||| |||| |||||||| ||| ||||||||||||||    
T  16281 aggtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaaggg 16222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 19566945 - 19566996
Alignment:
Q  47 ggggggcgtctctattcaccataaggattgtatgaacatatgggtagtgaag 98  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||||||||||    
T  19566945 ggggggagtctgtattcaccataagggttgtgtgaacatatgggtagtgaag 19566996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39435975 - 39436066
Alignment:
Q  1 agagatttcatcgtaggaaatcattagattctacaaacta-aggtaaggggggcgtctctattcaccataaggattgtatgaacatatgggtag 93  Q
    |||||||||| ||||||||||||| |  |||   |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||    
T  39435975 agagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaa-gggggagtctctattcaccataa-gactgtatgaacatatgggtag 39436066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 16093560 - 16093511
Alignment:
Q  41 aggtaaggggggcgtctctattcaccataaggattgtatgaacatatggg 90  Q
    ||||||| |||| ||||||||||||||||||| |||||| | ||||||||    
T  16093560 aggtaagaggggagtctctattcaccataagggttgtataatcatatggg 16093511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University