View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2825_low_9 (Length: 246)
Name: NF2825_low_9
Description: NF2825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2825_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39982424 - 39982191
Alignment:
| Q |
1 |
tgctaaaagcatcaggaacccagtgaccatagggacaagattcaaaatgaaatttgaaatggatgaatctctagaaagaaggtcagctatagcattagtt |
100 |
Q |
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| T |
39982424 |
tgctaaaagcatcaggaacccagtgaccatagggacaagattcaaaatgaaatttgaaatggatgaatctccagaaagaaggtcagctatagcattagtt |
39982325 |
T |
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| Q |
101 |
ataaatctttagcaattgtctgtattctatctacaacatgatatcattttcatgtcttgcaggtgtagtagcggtatcgtgactggaatgagtgatttgg |
200 |
Q |
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| T |
39982324 |
ataaatctttagccattgtctgtattctatctacaacatgatatcattttcatgtcttgcaggtgtagtagcggtatcgtgactggaatgagtgatttgg |
39982225 |
T |
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| Q |
201 |
atccgtataaatggcccaagtcaaaatggtgatg |
234 |
Q |
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| T |
39982224 |
atccgtataaatggcccaagtcaaaatggagatg |
39982191 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 22237430 - 22237509
Alignment:
| Q |
4 |
taaaagcatcaggaacccagtgaccatagggacaagattcaaaatgaaatttgaaatggatgaatctctagaaagaaggt |
83 |
Q |
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| T |
22237430 |
taaaagcatcaagaatccaatgaccatagggacaagattcaaaatgagaattgaaatggacgaatcgcctgaaagaaggt |
22237509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 22237570 - 22237661
Alignment:
| Q |
138 |
atgatatcattttcatgtcttgcaggtgtagtagcggtatcgtgactggaatgagtgatttggatccgtataaatggcccaagtcaaaatgg |
229 |
Q |
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| T |
22237570 |
atgatattatcttcctatcttgcaggtgtagtagtggtatgttgattggaataaatgacttggatccctatagatggcctaaatcaaaatgg |
22237661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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