View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826-Insertion-1 (Length: 806)
Name: NF2826-Insertion-1
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 8 - 803
Target Start/End: Complemental strand, 43460278 - 43459482
Alignment:
| Q |
8 |
agtatatcaaggctcacgtgaccatgtccttcaattctttgagtcatgtgggtttaaatgtcctgagagaaaaggaactgcagatttcttgcaagaggta |
107 |
Q |
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| T |
43460278 |
agtatatcaaggctcacgtgaccatgtccttcaattctttgagtcatgtgggtttaaatgtcctgagagaaaaggaactgcagatttcttgcaagaggta |
43460179 |
T |
|
| Q |
108 |
tcatcatacattacatcatcttaacaaaccttataccatgttgatcgaatcatacgtt-atcctaattttgtacaggttacttcaaggaaagatcaagaa |
206 |
Q |
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| T |
43460178 |
tcatcatacattacatcatcttaacaaaccttataccatgttgatcgaatcacacgtttatcgtaattttttacaggttacttcaaggaaagatcaagaa |
43460079 |
T |
|
| Q |
207 |
caatactggtcaaacagaaacatacaataccgttatataacagtaactgaatttgcaaacagtttcaaacatttccatgttggaacacagcttcaaaatg |
306 |
Q |
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| T |
43460078 |
caatactggtcaaacagaaacatacaataccgttatataacagtaactgagtttgcaaacagtttcaaacatttccatgttggaacacagcttcaaaatg |
43459979 |
T |
|
| Q |
307 |
aactatctctaccatttgacaagtcaacaggacatagagcatctcttgttttcaagagatacactgtctctaaaatgggacttctcaaagcatgttggga |
406 |
Q |
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| T |
43459978 |
aactatctctaccatttgacaagtcaacaggacatagagcatctcttgttttcaagagatacactgtctctaaaatgggacttctcaaagcatgttggga |
43459879 |
T |
|
| Q |
407 |
caaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagttcaaatatgcattattgctgtgatatgtggaacagtttttataagg |
506 |
Q |
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| T |
43459878 |
caaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagttcaaatatgcattattgctgtgatatgtggaacagtttttataagg |
43459779 |
T |
|
| Q |
507 |
actaaaatgcatcaaagaaatgagggtgatgcatctgtttatattggtgcaattttgtttactatgattatgaacatgttcaatggtttctctgagttgc |
606 |
Q |
| |
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| T |
43459778 |
actaaaatgcatcaaagaaatgagggtgatgcatctgtttatattggtgcaattttgtttactatgattatgaacatgttcaatggtttctctgagttgc |
43459679 |
T |
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| Q |
607 |
cactcacaattgcaagacttcctgtgttctacaaacatagagatcgcctttttcatcctccatggacttacactctccctaattttcttctaaggattcc |
706 |
Q |
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| T |
43459678 |
cactcacaattgcaagacttcctgtgttctacaaacatagagatcacctttttcatcctccatggacttacactctccctaattttcttctaaggattcc |
43459579 |
T |
|
| Q |
707 |
tatttccatttttgaggctatagtttgggttcttattacatattacacaattggatttgcacctgaagctagtaggtaaactcaatcaccttaactc |
803 |
Q |
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| T |
43459578 |
tatttccatttttgaggctatagtttgggttcttattacatattacacaattggatttgcacctgaagctagtaggtaaactcaatcaccttaactc |
43459482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 679
Target Start/End: Original strand, 4499424 - 4499553
Alignment:
| Q |
550 |
ttggtgcaattttgtttactatgattatgaacatgttcaatggtttctctgagttgccactcacaattgcaagacttcctgtgttctacaaacatagaga |
649 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| |||| | |||| |||||| ||| ||||||||||| || ||||| ||||| |
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| T |
4499424 |
ttggtgcgattttgttcgctatgattatgaacatgttcaatggttttgctgaacttgcactaacaattcaaaggcttcctgtgttttataaacaaagaga |
4499523 |
T |
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| Q |
650 |
tcgcctttttcatcctccatggacttacac |
679 |
Q |
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| T |
4499524 |
tcaccttttccatcctgcttggacttacac |
4499553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 479
Target Start/End: Original strand, 4499267 - 4499353
Alignment:
| Q |
393 |
aaagcatgttgggacaaagaatgccttttaataaagagaaactcttttatttacatattcaagtcagttcaaatatgcattattgct |
479 |
Q |
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||||||||||||||||||||||| || | || || |||||||| ||| | ||||| |||||| ||| |||||| ||||| |||||| |
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| T |
4499267 |
aaagcatgttgggacaaagaatggctacttatcaaaagaaactcctttgtctacattttcaagacagctcaaatttgcatcattgct |
4499353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 49770593 - 49770634
Alignment:
| Q |
179 |
acaggttacttcaaggaaagatcaagaacaatactggtcaaa |
220 |
Q |
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| T |
49770593 |
acaggtaacttcaagaaaagatcaagaacagtactggtcaaa |
49770634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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