View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826-Insertion-2 (Length: 601)
Name: NF2826-Insertion-2
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 601
Target Start/End: Complemental strand, 33355927 - 33355329
Alignment:
| Q |
7 |
agttttggtgggctatcttcctacaaaaccagcttcgtttcattcactttaagcacacnnnnnnnnnngcttttgtaagttaaagctcacttacaaagag |
106 |
Q |
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| T |
33355927 |
agttttggtgggctatcttcctacaaaaccagcttcgtttcattcactttaagcacacaaataaaaaagcttttgtaagttaaagctcacttacaaagag |
33355828 |
T |
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| Q |
107 |
aaagataaactatatgctt---atacacacatcaaatggcaccctcttactgtgtgaaggagaacaaagagtgtgtgaaatgggttgagacatacttcaa |
203 |
Q |
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| T |
33355827 |
aaagataa-ctatatgcttcatatacacaaatcaaatggcaccctcttactgcgttaaggagaacaaagagtgtgtgaaatgggttgagacatacttcaa |
33355729 |
T |
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| Q |
204 |
agactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataatcaccatt |
303 |
Q |
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| T |
33355728 |
agactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataatcaccatt |
33355629 |
T |
|
| Q |
304 |
tttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattcattatatacacactctcttttttgtt |
403 |
Q |
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| T |
33355628 |
tttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattcattatatacacactctcttttttgtt |
33355529 |
T |
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| Q |
404 |
tccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaaaaatccattggatcatgttagttagcttaaatgt |
503 |
Q |
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| T |
33355528 |
tccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagcaaaatccattggatcatgttagttagcttaaatgt |
33355429 |
T |
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| Q |
504 |
tatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaacaccaacatgatacaaacacatgtagttacttttaa |
601 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||| |
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| T |
33355428 |
tatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaacatccacatgatacaaacacatgtagttacatttaa |
33355329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 368
Target Start/End: Original strand, 7217385 - 7217557
Alignment:
| Q |
196 |
tacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataa |
295 |
Q |
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||||||| |||||||| |||||| | | ||| |||| ||||||| ||| ||| |||| |||||| | | ||||| ||||||||||||||||| || | |
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| T |
7217385 |
tacttcagtgactgtctctgcaatgttaatgataacatttcattcacttttggattcatcagtttaatttgttggggtgttgctgaaattcctcaaatta |
7217484 |
T |
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| Q |
296 |
tcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagt |
368 |
Q |
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|||| | |||||| ||||| |||||||| |||| ||| |||||| ||||||||||| || |||||||| |
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| T |
7217485 |
tcactaattttcgtgctaagtctagccatggtgtttctattgtctttcttcttacttgggttgctgggttagt |
7217557 |
T |
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