View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826-Insertion-3 (Length: 594)

Name: NF2826-Insertion-3
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826-Insertion-3
NF2826-Insertion-3
[»] chr8 (3 HSPs)
chr8 (180-521)||(3595883-3596230)
chr8 (17-126)||(3596269-3596378)
chr8 (521-568)||(3595802-3595849)
[»] chr6 (15 HSPs)
chr6 (180-521)||(4388634-4388977)
chr6 (180-521)||(4375940-4376282)
chr6 (290-521)||(4383621-4383856)
chr6 (13-126)||(4375783-4375902)
chr6 (32-126)||(4388481-4388575)
chr6 (303-520)||(4415565-4415781)
chr6 (180-256)||(4383529-4383605)
chr6 (462-519)||(5726559-5726616)
chr6 (521-585)||(4376318-4376382)
chr6 (459-519)||(4359286-4359346)
chr6 (33-88)||(4383423-4383476)
chr6 (184-239)||(4415876-4415931)
chr6 (65-125)||(5726959-5727019)
chr6 (547-594)||(4389031-4389078)
chr6 (297-341)||(4359124-4359168)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 180 - 521
Target Start/End: Complemental strand, 3596230 - 3595883
Alignment:
Q  180 actccatattcaacatacaaatcagcaatcacatcatgtagagacttcagatatagagtaccatcaatgtttccattatccttcagattttgaattcgct 279  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3596230 actccatattcatcatacaaatcagcaatcacatcatgtagagacttcagatatggagtaccatcaatgtttccattatccttcagattttgaattcgct 3596131  T
Q  280 cagcaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacagcatcattataagctttttgccacaaaa-gtttcttcttttagc 378  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  3596130 caacaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacaacatcattataagttttttgccacaaaaggtttcttctcttagc 3596031  T
Q  379 atggacctaa------acaaatacaaatacaattaagataagcaattaagtactatgtattttacaattcacattcaannnnnnnncatcttaccatctc 472  Q
    ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  3596030 atggacctaaacaaatacaaatacaaatacaattaagataagcaattaagtactatgtattttacaattcacattcaa-tttttttcatcttaccatctc 3595932  T
Q  473 aaaggcactctgattacgctcacccccataagaactgcatgtcaagctt 521  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  3595931 aaaggcactctgattactctcacccccataagaacttcatgtcaagctt 3595883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 3596378 - 3596269
Alignment:
Q  17 ttaagctatatagtattttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaat 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3596378 ttaagctatatagtattttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaatcagaat 3596279  T
Q  117 gttccatttg 126  Q
     |||||||||    
T  3596278 attccatttg 3596269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 568
Target Start/End: Complemental strand, 3595849 - 3595802
Alignment:
Q  521 tccctttccaaagggactccagcaaactgatggaacctcattaccagc 568  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  3595849 tccctttccaaagggactccaccaaactgatggaacttcattaccagc 3595802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 180 - 521
Target Start/End: Original strand, 4388634 - 4388977
Alignment:
Q  180 actccatattcaacatacaaatcagcaatcacatcatgtagagacttcagatatagagtaccatcaatgtttccattatccttcagattttgaattcgct 279  Q
    |||||||||||| ||||||||| |||||||||||||||||| || ||||||| | ||||||| |||||| |||||||||||||||||||||||| | |||    
T  4388634 actccatattcatcatacaaataagcaatcacatcatgtagggatttcagatttggagtaccttcaatgcttccattatccttcagattttgaactagct 4388733  T
Q  280 cagcaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacagcatcattataagctttttgccacaaaa-gtttcttcttttagc 378  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||  | |||||    
T  4388734 caacaaaccatctggctttctcttcagccaattttgaattagccatgacatagacaacatcattataagttttttgccacaaaaggtttctgttcttagc 4388833  T
Q  379 atggacctaaacaaatacaaatacaattaagataagcaattaagtactatgtattttacaattcacattcaa-nnnnnnnncatcttaccatctcaaagg 477  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||||||         ||||||||||||||||| |    
T  4388834 atggacctaaacaaattcaaatacaattaatataagcaagtaagtgctaggtattttacaattgacattcaatatttttttcatcttaccatctcaaatg 4388933  T
Q  478 cactctgattacgctcacccccataagaactgcatgtcaagctt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4388934 cactctgattacgctcacccccataagaactgcatgtcaagctt 4388977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 180 - 521
Target Start/End: Original strand, 4375940 - 4376282
Alignment:
Q  180 actccatattcaacatacaaatcagcaatcacatcatgtagagacttcagatatagagtaccatcaatgtttccattatccttcagattttgaattcgct 279  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||| | |||    
T  4375940 actccatattcatcatacaaatcagcaatcacgtcatgtagagacttaagatatggagtaccttcactgtttccattatccttcagattttgaagtagct 4376039  T
Q  280 cagcaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacagcatcattataagctttttgccacaaa-agtttcttcttttagc 378  Q
    ||  ||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||   |||||||||||| |||||||||| |||||    
T  4376040 caataaaccatcttgctttgtcttcagccaattttgaattagccatgacaaagagagaatcattataaatattttgccacaaagagtttcttctcttagc 4376139  T
Q  379 atggacctaaacaaatacaaatacaattaagataagcaattaagtactatgtattttacaattcacattcaa-nnnnnnnncatcttaccatctcaaagg 477  Q
    |||||||| ||||||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||         ||||||||||||||||| |    
T  4376140 atggacct-aacaaatacaaatacaattagcataagcaagtaagtgctatgtattttacaattcacattcaatatttttctcatcttaccatctcaaatg 4376238  T
Q  478 cactctgattacgctcacccccataagaactgcatgtcaagctt 521  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||    
T  4376239 cactccgattatgatcacccccataagaactgcatgtcaagctt 4376282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 290 - 521
Target Start/End: Original strand, 4383621 - 4383856
Alignment:
Q  290 tctagctttctcttcagccaattttgaattagccatgacaaagacagcatcattataagctttttgccacaaaa-gtttcttcttttagcatggacctaa 388  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |    
T  4383621 tctagctttctctacagccaattttgaattagccatgacaaagacagcatcattataagccttttgccacaaaaggtttcttctcttagcatgaacctga 4383720  T
Q  389 acaaatacaaatacaattaagataagcaatta--agtactatgtattttacaattcacattcaa-nnnnnnnncatcttaccatctcaaaggcactctga 485  Q
    ||||||| | ||||||||||||||| ||  ||  | ||||| ||||||||||||||||||||||         |||||||||||||| ||||||||| ||    
T  4383721 acaaatatagatacaattaagataatcaggtactactactaagtattttacaattcacattcaatatttttttcatcttaccatctcgaaggcactccga 4383820  T
Q  486 ttacgctcacccccataagaactgcatgtcaagctt 521  Q
    ||||||||||||||||||||||||||||||||||||    
T  4383821 ttacgctcacccccataagaactgcatgtcaagctt 4383856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 4375783 - 4375902
Alignment:
Q  13 aaccttaagctatatagtatt------ttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatt 106  Q
    |||||||||||||||||||||      |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||    
T  4375783 aaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtcaaattctaggtatttaatctagaaaatctttcaaatt 4375882  T
Q  107 taataagaatgttccatttg 126  Q
    |||| ||||| |||||||||    
T  4375883 taatcagaatcttccatttg 4375902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 4388481 - 4388575
Alignment:
Q  32 ttttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccatttg 126  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  4388481 ttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaatctagaaaatctttcaaatttaatcagaatcttccatttg 4388575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 303 - 520
Target Start/End: Complemental strand, 4415781 - 4415565
Alignment:
Q  303 tcagccaattttgaattagccatgacaaagacagcatcattataagctttttgccacaaaag-tttcttcttttagcatggacctaaacaaatacaaata 401  Q
    ||||| |||||||||||| |||||||||| ||| ||| ||||   |  ||||||| |||| | |||||||| ||||| |||||||| || ||||||||||    
T  4415781 tcagctaattttgaattaaccatgacaaaaacaacattattacgggtcttttgcctcaaacggtttcttctcttagcgtggacctataccaatacaaata 4415682  T
Q  402 caattaagataagcaattaagtactatgtattttacaattcacattcaannnnnnnn--catcttaccatctcaaaggcactctgattacgctcaccccc 499  Q
    ||||||| ||||||||    ||| || ||||||||||||||| ||||||          ||||||||||||||  |||||||||||||| ||||||||||    
T  4415681 caattaatataagcaa----gtagtaggtattttacaattcatattcaatgttttttatcatcttaccatctcgtaggcactctgattatgctcaccccc 4415586  T
Q  500 ataagaactgcatgtcaagct 520  Q
    ||||||||| |||||||||||    
T  4415585 ataagaactacatgtcaagct 4415565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 4383529 - 4383605
Alignment:
Q  180 actccatattcaacatacaaatcagcaatcacatcatgtagagacttcagatatagagtaccatcaatgtttccatt 256  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||| |||||| ||||| | ||||| ||||||||    
T  4383529 actccatattcatcatacaaatcagcaatcacatcacgttgagactttagatatcgagtagcttcaatttttccatt 4383605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 462 - 519
Target Start/End: Complemental strand, 5726616 - 5726559
Alignment:
Q  462 cttaccatctcaaaggcactctgattacgctcacccccataagaactgcatgtcaagc 519  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||    
T  5726616 cttaccatctcgaaggcacttttattacgctcacccccataagaactgcatgccaagc 5726559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 4376318 - 4376382
Alignment:
Q  521 tccctttccaaagggactccagcaaactgatggaacctcattaccagctgtcattacggcaacag 585  Q
    ||||| ||||||||  ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  4376318 tccctctccaaaggcgctccaccaaactgatggaacctcattaccagctgtcgttacggctacag 4376382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 519
Target Start/End: Original strand, 4359286 - 4359346
Alignment:
Q  459 catcttaccatctcaaaggcactctgattacgctcacccccataagaactgcatgtcaagc 519  Q
    |||||||||||||| |||||  || ||||| ||||||||||||||||||||| ||||||||    
T  4359286 catcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagc 4359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 4383423 - 4383476
Alignment:
Q  33 tttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatc 88  Q
    |||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  4383423 tttaacaagtaccaaga--taaacatcgataatagtcaaattctaggtatttaatc 4383476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 4415931 - 4415876
Alignment:
Q  184 catattcaacatacaaatcagcaatcacatcatgtagagacttcagatatagagta 239  Q
    |||||||| ||  |||||||||||||||||||| |||||||||||||||| |||||    
T  4415931 catattcatcacgcaaatcagcaatcacatcatatagagacttcagatatggagta 4415876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 5727019 - 5726959
Alignment:
Q  65 tagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccattt 125  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||| | ||||||    
T  5727019 tagtcaaattctatgtatttaatctagaaaatatttcaaattcaattagaatctcccattt 5726959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 594
Target Start/End: Original strand, 4389031 - 4389078
Alignment:
Q  547 ctgatggaacctcattaccagctgtcattacggcaacagaataaccca 594  Q
    |||||||||||||||||||||| ||||||||||| |||| || |||||    
T  4389031 ctgatggaacctcattaccagccgtcattacggctacaggatgaccca 4389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 4359124 - 4359168
Alignment:
Q  297 ttctcttcagccaattttgaattagccatgacaaagacagcatca 341  Q
    |||| ||| |||||||||||||||||||||||||| ||| |||||    
T  4359124 ttcttttcggccaattttgaattagccatgacaaaaacaacatca 4359168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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