View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826-Insertion-4 (Length: 536)

Name: NF2826-Insertion-4
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826-Insertion-4
NF2826-Insertion-4
[»] chr4 (15 HSPs)
chr4 (8-435)||(51112066-51112493)
chr4 (324-536)||(51112349-51112561)
chr4 (57-286)||(51111995-51112203)
chr4 (159-337)||(51111956-51112134)
chr4 (176-468)||(51112147-51112460)
chr4 (246-373)||(51111890-51112017)
chr4 (54-302)||(51112253-51112525)
chr4 (105-181)||(51111989-51112065)
chr4 (429-497)||(51112028-51112096)
chr4 (339-500)||(51112211-51112360)
chr4 (90-151)||(51111875-51111936)
chr4 (413-468)||(51111958-51112013)
chr4 (404-474)||(51112210-51112280)
chr4 (428-493)||(51111874-51111939)
chr4 (396-433)||(51112028-51112065)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 51112066 - 51112493
Alignment:
Q  8 agacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  51112066 agacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatgctgcatctttggtcttctcggca 51112165  T
Q  108 gcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcat 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112166 gcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcat 51112265  T
Q  208 aatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112266 aatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctctt 51112365  T
Q  308 ctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcgcctgcatactctttggtcttc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||     
T  51112366 ctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggttttt 51112465  T
Q  408 tctgtagcatcacctgcatactctttgg 435  Q
    | || |||||||||||||||||||||||    
T  51112466 tgtgcagcatcacctgcatactctttgg 51112493  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 324 - 536
Target Start/End: Original strand, 51112349 - 51112561
Alignment:
Q  324 gcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcgcctgcatactctttggtcttctctgtagcatcacctg 423  Q
    ||||| |||||| | ||||| | |||| | || ||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  51112349 gcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctg 51112448  T
Q  424 catactctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttggctttctgtgcagccttctgagc 523  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112449 catactctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttggctttctgtgcagccttctgagc 51112548  T
Q  524 agcattagtagca 536  Q
    ||||| |||||||    
T  51112549 agcatcagtagca 51112561  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 286
Target Start/End: Original strand, 51111995 - 51112203
Alignment:
Q  57 tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttct 156  Q
    ||||| ||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| | ||||          
T  51111995 tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgcagcattgg------ 51112088  T
Q  157 gtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcacc 256  Q
                   |||| ||| | ||||| ||||  |||||||| |||||||||||||||||||||||||||||||||| | |||  |||||||||||    
T  51112089 ---------------catattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatgctgcatctttggtcttctcggcagcatcacc 51112173  T
Q  257 agcatactctttagacttgtatgctgcatc 286  Q
    |||||| ||||||| |||||||||||||||    
T  51112174 agcatagtctttagtcttgtatgctgcatc 51112203  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 51111956 - 51112134
Alignment:
Q  159 gcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccag 258  Q
    |||||||||| | ||||||||||||  || | ||| || ||||| ||||| ||||||||||| |||||||||||||||| | ||| |||||||||||| |    
T  51111956 gcagcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctg 51112055  T
Q  259 catactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggt 337  Q
    |||| ||||||||||||||||||||| || | ||||| ||| |  |||| |  |||||| |||| ||||| ||||||||    
T  51112056 catagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggt 51112134  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 176 - 468
Target Start/End: Original strand, 51112147 - 51112460
Alignment:
Q  176 atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttg 275  Q
    ||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||||||||   |||| ||||| | |||     
T  51112147 atctttggtcttctcggcagcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttc 51112246  T
Q  276 tatgctgcatcagttgcatactctttgctct---------------------tctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgc 354  Q
    | ||||||||||  |||||| |||||| |||                     |||| | |||| |||||||||| ||||| |  || | ||| |||||      
T  51112247 tctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcag 51112346  T
Q  355 ctgcatactctttggtcttctctgtagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacc 454  Q
     ||||||||||||| ||||||  |||||| | || ||||| |||||||| |||| || |||||| |||||||||||||||||||| | || |||||||||    
T  51112347 ttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacc 51112446  T
Q  455 tgcatactctttgg 468  Q
    ||||||||||||||    
T  51112447 tgcatactctttgg 51112460  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 51111890 - 51112017
Alignment:
Q  246 gcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtg 345  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| | ||||||||| |  | || |||| |||| |||| ||||| ||||||| ||| ||||    
T  51111890 gcagcatcacctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttggctttttgtg 51111989  T
Q  346 cagcatcgcctgcatactctttggtctt 373  Q
    |||| || || ||||| |||||||||||    
T  51111990 cagcttcaccagcatagtctttggtctt 51112017  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 302
Target Start/End: Original strand, 51112253 - 51112525
Alignment:
Q  54 gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc-------- 145  Q
    |||||||| ||||||||||||||||||| |||||||||||||| | |||  ||||||||||||||||| ||||||| |||||||||||||||            
T  51112253 gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcat 51112352  T
Q  146 ----tttggccttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgtatg---------ctgcat- 231  Q
        ||||  |||||| | |||| |||   |||| |||||||| |||| ||| ||||| |||||||| ||||||||||| | ||         ||||||     
T  51112353 actctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcata 51112452  T
Q  232 --ctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttg 302  Q
      ||||||   | |||||||||||||| ||||||||||| |||||||  |||||| |||| ||||| ||||||    
T  51112453 ctctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttg 51112525  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
Q  105 gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt 181  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||| | |||| |||||    
T  51111989 gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt 51112065  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 51112028 - 51112096
Alignment:
Q  429 tctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattct 497  Q
    ||||||||||| | |||||||||||||||||| ||||| |||||||  |||||| || |||||||||||    
T  51112028 tctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattct 51112096  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 500
Target Start/End: Original strand, 51112211 - 51112360
Alignment:
Q  339 ttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtct 438  Q
    |||||||||||||| | | |||| ||||||||||||||||  ||||| |||||||| ||||||||||| | ||         ||||||   |||||| |     
T  51112211 ttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgtatg---------ctgcat---ctttggcca 51112298  T
Q  439 tttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttg 500  Q
    | |||||||||||||| ||||||||||| |||||||  |||||| |||| ||||| ||||||    
T  51112299 tctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttg 51112360  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
Q  90 tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc 151  Q
    |||||||| || | |||||||||||| |||||||||||||  |||||||||||||| |||||    
T  51111875 tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc 51111936  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 51111958 - 51112013
Alignment:
Q  413 agcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg 468  Q
    ||||||||||||||| |||||||  ||||||||||| ||||| ||||| |||||||    
T  51111958 agcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttgg 51112013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 51112210 - 51112280
Alignment:
Q  404 cttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgt 474  Q
    ||||| || |||||||| | |||| ||||||||||| | ||| |||||||||||||| ||||||| |||||    
T  51112210 cttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgt 51112280  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 493
Target Start/End: Original strand, 51111874 - 51111939
Alignment:
Q  428 ctctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcata 493  Q
    ||||||||| ||||| ||||||||||||||||| ||||| || ||||  |||||| || |||||||    
T  51111874 ctctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggcata 51111939  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 51112028 - 51112065
Alignment:
Q  396 tctttggtcttctctgtagcatcacctgcatactcttt 433  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  51112028 tctttggtcttctctgcagcatcacctgcatagtcttt 51112065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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