View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826-Insertion-5 (Length: 443)
Name: NF2826-Insertion-5
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 66 - 443
Target Start/End: Original strand, 46795175 - 46795564
Alignment:
| Q |
66 |
gtgtccatttcaattttctccctttagaagaacaactaccatcaccgccaccaccgccggaaaatgatttgttgctatttgaatcaaaaaatgggctgtt |
165 |
Q |
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| T |
46795175 |
gtgtccatttcaattttctccctttagaagaacaactaccatcaccgccaccaccgccggaaaatgatttgttgctatttgaatcaaaaaatgggctgtt |
46795274 |
T |
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| Q |
166 |
------------gttgttgtaacaagcagcgtttttagttctagctagttctttgattgcagtgtcagatttagtgaaaagccactcaagtgtgttactt |
253 |
Q |
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| T |
46795275 |
gtcgttgttgttgttgttgtaacaagcagcgtttttagttctagctagttctttgattgcagtgtcagatttagtgaaaagccactcaagtgtgttactt |
46795374 |
T |
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| Q |
254 |
ggtttgtcaaactctaacatatcttgaagatcaaagaactttcttgctatttcacttgacaatcttacccttctgtctctcaaaccctgtgatgtgtgaa |
353 |
Q |
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| T |
46795375 |
ggtttgtcaaactctaacatatcttgaagatcaaagaactttcttgctatttcacttgacaatcttacccttctgtctctcaaaccctgtgatgtgtgaa |
46795474 |
T |
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| Q |
354 |
tcttactgtgcctatctttctttcctcctataactgttgctggttgtttctgctctgtcacaacaaaatttggaattggaaaactactag |
443 |
Q |
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| T |
46795475 |
tcttactgtgcctatctttctttcctcctataactgttgctggttgtttctgctctgtcacaacaaaatttggaattggaaaactactag |
46795564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 6032191 - 6032037
Alignment:
| Q |
221 |
gatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttcttgctatttcacttgacaatctta |
320 |
Q |
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| T |
6032191 |
gatttattgaagagccattcaagtgtgttgcttgctttgtcaaaccctaacatgtcttgaagatcgaagaacttcctcgcgatctcgatggaaagtctca |
6032092 |
T |
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| Q |
321 |
cccttctgtctctcaaaccctgtgatgtgtgaatcttactgtgcctatctttctt |
375 |
Q |
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| T |
6032091 |
cccttctgtctctcaacccttgagatgtgtgaatcttgctatgcctgtctttctt |
6032037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 6711326 - 6711250
Alignment:
| Q |
220 |
agatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttc |
296 |
Q |
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| T |
6711326 |
agattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaactttc |
6711250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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