View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826-Insertion-8 (Length: 350)

Name: NF2826-Insertion-8
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826-Insertion-8
NF2826-Insertion-8
[»] chr2 (8 HSPs)
chr2 (5-349)||(35026277-35026621)
chr2 (80-259)||(34998591-34998770)
chr2 (80-343)||(35019105-35019368)
chr2 (80-259)||(35012079-35012258)
chr2 (80-343)||(35033292-35033555)
chr2 (239-349)||(35036810-35036920)
chr2 (239-349)||(36288565-36288675)
chr2 (239-349)||(35009013-35009123)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 349
Target Start/End: Complemental strand, 35026621 - 35026277
Alignment:
Q  5 acagttaatccttttccttggctatgtcttggtccattccaaaaataagatattgaaaatggacttgttatccaatattgaagactttttatgccaagtt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35026621 acagttaatccttttccttggctatgtcttggtccattccaaaaataagatattgaaaatggacttgttatccaatattgaagactttttatgccaagtt 35026522  T
Q  105 tttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgttcaatttgtttttctgtttgatccat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35026521 tttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgttcaatttgtttttctgtttgatccat 35026422  T
Q  205 tgctgtagcaataagagggaataaaaaaggaggaacatctgaagatgtttcagcaccaaagggaagaccatcaatgtgaggaacactgagagggtaaaaa 304  Q
    |||||||||||||||||||| |||| ||   || ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  35026421 tgctgtagcaataagagggactaaagaaaagggtacatctgaagatgtttcagcaccatcgggaagaccatcaatgtgaggaacattgagagggtaaaaa 35026322  T
Q  305 gtgatgaggtttgggttaaggttgagatgttgtaacttggtttgt 349  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  35026321 gtgatgagatttgggtttaggttgagatgttgtaacttggtttgt 35026277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 34998591 - 34998770
Alignment:
Q  80 tattgaagactttttatgccaagtttttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgtt 179  Q
    |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  ||    
T  34998591 tattgaagacttttgataccaagtttttgagtcaagtttggtagccaatattgaaaatcaaagaaaactatttgtggctttagttcctttagaagagatt 34998690  T
Q  180 caatttgtttttctgtttgatccattgctgtagcaataagagggaataaaaaaggaggaacatctgaagatgtttcagca 259  Q
    |||||||||| || ||||| ||||| |||||||||||||||||||||||| |||  || ||||||||||  |||||||||    
T  34998691 caatttgtttctcagtttggtccatggctgtagcaataagagggaataaagaagagggtacatctgaagtagtttcagca 34998770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 35019105 - 35019368
Alignment:
Q  80 tattgaagactttttatgccaagtttttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgtt 179  Q
    |||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||  ||||| | |||| |||    
T  35019105 tattgaagacttttgataccaagtttttgagtcaagttaggtagccaatattgaaaatcaaagaaaactatttgtggctttaactccttcaaaagaagtt 35019204  T
Q  180 caatttgtttttctgtttgatccattgctgtagcaataagagggaataaaaaaggaggaacatctgaagatgtttcagcaccaaagggaagaccatcaat 279  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||| ||   || |||||||||| ||||||||||  |   ||||| |||| ||     
T  35019205 caatttgtttatctgtttgatccatggctgtagcaataagagggaataaagaaaatggcacatctgaagttgtttcagcattatgaggaaggccattaac 35019304  T
Q  280 gtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttg 343  Q
     ||||||||  ||| |||| |||| || || || ||||| | ||| ||||||||||||||||||    
T  35019305 atgaggaactgtgatagggaaaaacgtaataagatttggatgaagattgagatgttgtaacttg 35019368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 35012079 - 35012258
Alignment:
Q  80 tattgaagactttttatgccaagtttttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgtt 179  Q
    |||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||  ||||| | |||| |||    
T  35012079 tattgaagacttttgataccaagtttttgagtcaagttaggtagccaatattgaaaatcaaagaaaactatttgtggctttaactccttcaaaagaagtt 35012178  T
Q  180 caatttgtttttctgtttgatccattgctgtagcaataagagggaataaaaaaggaggaacatctgaagatgtttcagca 259  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||| ||   || |||||||||| ||||||||||    
T  35012179 caatttgtttatctgtttgatccatggctgtagcaataagagggaataaagaaaatggcacatctgaagttgtttcagca 35012258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 343
Target Start/End: Complemental strand, 35033555 - 35033292
Alignment:
Q  80 tattgaagactttttatgccaagtttttgagtcaaatttggaagccaatattgaaaatcaaagaaaactatttgtgggtttagttccttaagaagatgtt 179  Q
    ||||| |||||||| ||| |||| |||| |||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| || ||||||  ||    
T  35033555 tattgcagacttttgatgtcaaggtttttagtcaactttggaagccaatattggaagtcaaagaaaactatttgtggctttatttctttgagaagaattt 35033456  T
Q  180 caatttgtttttctgtttgatccattgctgtagcaataagagggaataaaaaaggaggaacatctgaagatgtttcagcaccaaagggaagaccatcaat 279  Q
    |||| |  || |||||||||||||| ||||||||||||||||||| |||| ||   || |||||||||| |||||||||| |||  |||||||||| ||     
T  35033455 caatatccttctctgtttgatccatggctgtagcaataagagggactaaagaaaagggcacatctgaagttgtttcagcatcaagaggaagaccattaac 35033356  T
Q  280 gtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttg 343  Q
     ||||||||  ||| |||| |||| || || || ||||| | ||| ||||||| ||||||||||    
T  35033355 atgaggaactgtgatagggaaaaaggtaataagatttggataaagattgagatattgtaacttg 35033292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 35036810 - 35036920
Alignment:
Q  239 acatctgaagatgtttcagcaccaaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgta 338  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||||| | ||||||||  |||| ||    
T  35036810 acatctgaagtggtttcagcaccaaatggaagaccatgaatgtgaggaacattgagagggtaaaaagtgatgagatttggataaaggttgaattgttcta 35036909  T
Q  339 acttggtttgt 349  Q
    | |||||||||    
T  35036910 atttggtttgt 35036920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 36288675 - 36288565
Alignment:
Q  239 acatctgaagatgtttcagcaccaaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgta 338  Q
    ||||||||||  |||||||| |||||||| || || ||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||  | || ||    
T  36288675 acatctgaagtggtttcagcgccaaagggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttcta 36288576  T
Q  339 acttggtttgt 349  Q
    |||||||||||    
T  36288575 acttggtttgt 36288565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 35009123 - 35009013
Alignment:
Q  239 acatctgaagatgtttcagcaccaaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgta 338  Q
    ||||||||||  |||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||| |  ||||| | ||||||||  |||| ||    
T  35009123 acatctgaagtggtttcagcaccaaatggaagaccatgaatatgaggaacattgagagggtaaaaagtgattaaatttggataaaggttgaattgttcta 35009024  T
Q  339 acttggtttgt 349  Q
    | |||||||||    
T  35009023 atttggtttgt 35009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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