View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_high_13 (Length: 391)
Name: NF2826_high_13
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 48020565 - 48020945
Alignment:
| Q |
16 |
cagagaataaaaagaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggcaggaacgttgtgactataaggagatgttt |
115 |
Q |
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| T |
48020565 |
cagagaataaaaagaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggcaggaacgttgtgactataaggagatgttt |
48020664 |
T |
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| Q |
116 |
tttgcaaatgagaaatgtgtcattatggtttgtttggttggtactcctaattccaatactcccactacttctttgnnnnnnnctattgtcctgaatcctt |
215 |
Q |
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| T |
48020665 |
tttgcaaatgagaaatgtgtcattatggtttgtttggttggtactcctaattccaatactaccactacttctttgttttgtctttttctattg--tcctt |
48020762 |
T |
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| Q |
216 |
aatccttaataatcctatgttgt-----------------tttgttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgc |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020763 |
aatccttaataatcctatgttgttttgtttgttggattaatttgttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgc |
48020862 |
T |
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| Q |
299 |
caatataatcatgtccattgttcacaatctttgcatgttgtctcattttcaattatc-ttttgagtattggttgtagtttctt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48020863 |
caatataatcatgtccattgttcacaatctttgcatgttgtctcattttcaattatctttttgagtattggttgtagtttctt |
48020945 |
T |
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