View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_high_16 (Length: 367)
Name: NF2826_high_16
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 351
Target Start/End: Complemental strand, 42664634 - 42664306
Alignment:
| Q |
24 |
tgaatattggtaattgaagagagtctttcgattctagtctatgctagattgctaccatgaagaa-gnnnnnnngaaatgtttaattctgcacgttggtcg |
122 |
Q |
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| T |
42664634 |
tgaatattggtaattgaagagagtttttcgattctagtccatgctagattgctaccatgaagaaagaaaaagagaaatgtttaattatgcacgttggtcg |
42664535 |
T |
|
| Q |
123 |
attaaattcacaatctgatagttacgaattattttaattacattacattatcctattctacacataattcaccatttttatgaggtaaatatcattatgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664534 |
attaaattcacaatctgatagttacgaattattttaattacattacattatcctattctacacataattcaccatttttatgaggtaaatatcattatgg |
42664435 |
T |
|
| Q |
223 |
tttatgatcattaacattgttgtatcttaaatctccatctctaggctctgctctactggacttccaagtgatgttattattgaaattggtgatgcatcct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664434 |
tttatgatcattaacattgttgtatcttaaatctccatctctaggctctgctctactggacttccaagtgatgttattattgaaattggtgatgcatcct |
42664335 |
T |
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| Q |
323 |
tccatctccacaaggtatatatgtttcat |
351 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42664334 |
tccatctccacaaggtatatatgtttcat |
42664306 |
T |
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