View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_high_19 (Length: 323)
Name: NF2826_high_19
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 46794815 - 46795122
Alignment:
| Q |
1 |
acatcatgttccttttaatcataatggattcctcaatcacattaaatccaccatgatctctaggtatttcactatccaataggttatgatgattatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46794815 |
acatcatgttccttttaatcataatggattcctcaatcacattaaatccaccatgatctctaggtatttcactatccaataggttatgatgattatgaaa |
46794914 |
T |
|
| Q |
101 |
agaagggttactataggtctgaagttgaagaagctgacgccatcttgcataagcctcagtttcagtactatcagcaggtgatgttgaagatgacatcaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
46794915 |
agaagggttactataggtctgaagttgaagaagctgacgccatcttgcataagcctcagtttcagtactatcaacaggtgatgttgaagatgaaatcaat |
46795014 |
T |
|
| Q |
201 |
tgttgcagcatttgttgagtatttgttgaatctgcaccaggcccagggtacctaatttcttcttgttgcattcttccactgctacacatcttgtaacaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795015 |
tgttgcagcatttgttgagtatttgttgaatctgcaccaggcccagggtacctaatttcttcttgttgcattcttccactgctacacatcttgtaacaag |
46795114 |
T |
|
| Q |
301 |
tcctttct |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
46795115 |
tcctttct |
46795122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University