View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_high_2 (Length: 699)
Name: NF2826_high_2
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_2 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0081 (1 HSPs) |
| | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 210 - 690
Target Start/End: Complemental strand, 24065064 - 24064586
Alignment:
| Q |
210 |
atgattcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattg |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24065064 |
atgattcatcatgcctcgccaaaatcaacccgatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgtttctcctccattg |
24064965 |
T |
|
| Q |
310 |
gattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064964 |
gattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatg |
24064865 |
T |
|
| Q |
410 |
aagatgatttgaatcgcaatgcatgggaacttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064864 |
aagatgatttgaatcgcaatgcatgggaacttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttc |
24064765 |
T |
|
| Q |
510 |
aatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttga |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24064764 |
aatgaaaacgccattgatgctttgttagaactc--agagcgtttctcaaaggctgataggattcgcattgctactctccgttccaaaatcaacagtttga |
24064667 |
T |
|
| Q |
610 |
aacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064666 |
aacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
24064586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 214 - 690
Target Start/End: Original strand, 8847891 - 8848367
Alignment:
| Q |
214 |
ttcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggatt |
313 |
Q |
| |
|
|||||||||| || || |||||||| |||||||||| ||||| ||||| |||||||||||||||| |||| ||| ||||| |||| | |||||| |
|
|
| T |
8847891 |
ttcatcatgcctcatcagaatcaacctgatactgaatcagttttttacgtgcatccaagtgaaggaccgaattccgttcttgttactccactcttggatg |
8847990 |
T |
|
| Q |
314 |
gatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaaga |
413 |
Q |
| |
|
| | |||||||||||||||||| | ||||||||||| |||||||| || || || ||||||||||| ||| |||||||||||| |||| ||||| || |
|
|
| T |
8847991 |
gttttaactacctcgcatggagtcgttccatgattcgcgcttttggcgcgaagaacaaattgaagtttgttgatggatccatggaaattccagatgagga |
8848090 |
T |
|
| Q |
414 |
tgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaat |
512 |
Q |
| |
|
|||||||||| || || ||||||| |||||||||| | |||| |||||||| |||| || ||| | ||||| ||||||||||| || ||||| || |
|
|
| T |
8848091 |
agatttgaatc-taacgcctgggaacattgcaatcatctaattcagtcatggattatcaattcagttactcctcatattgcacaaacactggtttttcat |
8848189 |
T |
|
| Q |
513 |
gaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaac |
612 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||| | |||| |||| ||| | ||||| |||||||| || ||||| || ||||||| ||||||| |
|
|
| T |
8848190 |
gaaaacgtcattgatgcttggttagatctcaaagaacacttctgtaaggtagatcgcattcgcattgctacacttcgttctaagatcaacaatttgaaat |
8848289 |
T |
|
| Q |
613 |
aaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
|||||| | ||||| |||||||| || ||||||| |||||||||||||||| |||||||||| || ||||| |||| |
|
|
| T |
8848290 |
caggttctaggtcagttttggattattttactgaaaggaaaactctttgggaaaagttgaattcacaccgtccaatgc |
8848367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 24065254 - 24065138
Alignment:
| Q |
20 |
tccataacatggtatctatagtttttcttcccatttccatggcggaagttagttacagtttcattcttcatcannnnnnngcagaaatttttgcgatctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
24065254 |
tccataacatggtatctatagtttttcttcccatttccatggcggaagttagttacagtttcattcttcatcatttttttgcagaaatttttgcgatttt |
24065155 |
T |
|
| Q |
120 |
cctttgtttcttaacag |
136 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
24065154 |
cctttgtttcttcacag |
24065138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 307 - 679
Target Start/End: Original strand, 19651737 - 19652110
Alignment:
| Q |
307 |
ttggattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatg |
406 |
Q |
| |
|
|||||| |||| || ||||||||||||| | | ||||||||||||||||| || || || || ||||||||||| ||| ||| ||||||||| ||| || |
|
|
| T |
19651737 |
ttggatggatccaattacctcgcatggaatcgttccatgattcgagctttgggcgcgaagaacaaattgaagtttgttgatggttccatggatgttcctg |
19651836 |
T |
|
| Q |
407 |
atgaagatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgt |
505 |
Q |
| |
|
|||| |||||||||||||| | ||| ||||||| || |||||| | ||||||||||||| || | | |||||||||||||||||| |||||| | || |
|
|
| T |
19651837 |
atgaggatgatttgaatcgaagtgcttgggaacgatgaaatcatcttattcaatcatggattattaactctgtttcacctcaaattgctcaaactttggt |
19651936 |
T |
|
| Q |
506 |
tttcaatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagt |
605 |
Q |
| |
|
||| |||||| ||||||||| |||| | | || || || || |||||||| || |||||||| || || || |||||||| || |||| || |||| | |
|
|
| T |
19651937 |
ttttcatgaaaccgccattgaagcttggcttgaccttaaggaacgtttctccaaagctgatagaatacgcatagctactcttcgatccatgattaacaat |
19652036 |
T |
|
| Q |
606 |
ttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctca |
679 |
Q |
| |
|
||||| |||||||| ||||| || | |||||||| ||||| ||| ||||| ||||| || ||||||||||| |
|
|
| T |
19652037 |
ttgaagcaaggttctaaatcggttatagattactttactgagatgcgtactctatgggaggaattgaattctca |
19652110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 667
Target Start/End: Original strand, 15997312 - 15997372
Alignment:
| Q |
607 |
tgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaaga |
667 |
Q |
| |
|
||||||| ||||||||||| || || |||||||||||| ||||||| |||| |||||||| |
|
|
| T |
15997312 |
tgaaacagggttcaaaatccgttttagattacttcactaaaatgaagtctctgtgggaaga |
15997372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 211 - 690
Target Start/End: Original strand, 24674669 - 24675149
Alignment:
| Q |
211 |
tgattcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattgg |
310 |
Q |
| |
|
|||||||| |||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24674669 |
tgattcattatgccttgccaaaatcaacctgatactgaatccattttctacgttcatccaagtgaaggatctaattctgttattgttgctcctccattgg |
24674768 |
T |
|
| Q |
311 |
attgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatga |
410 |
Q |
| |
|
|| ||||||||||||||| |||||| | |||||| ||||||||||||| ||||||||| |||||||||||| || ||||||||| |||| | |||| |
|
|
| T |
24674769 |
atggatcaaactacctcggatggaggcgttccatggttcgagcttttggcatgaaaaataaaatgaagttcattgatgtatccatggagattcctaatga |
24674868 |
T |
|
| Q |
411 |
agatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttc |
509 |
Q |
| |
|
| | |||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||| | |||||| |
|
|
| T |
24674869 |
aaaagatttgaaccccaatgtgcgggaacgttgcaatcatttgattcaatcatggataatcaattctgtttcaactcaaattgcacaaacattagttttc |
24674968 |
T |
|
| Q |
510 |
aatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttga |
609 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| | ||| |
|
|
| T |
24674969 |
catgaaaacgcaattgatgcttggttagatctcaaatagcgtttctcaaaaattgatagaattcgcattgctactctccgttccaaaatcaacaatgtga |
24675068 |
T |
|
| Q |
610 |
aacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24675069 |
aacaaggttcaaaatatgtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcatcctatgc |
24675149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 232 - 690
Target Start/End: Original strand, 28736569 - 28737028
Alignment:
| Q |
232 |
aatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcgcat |
331 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||| ||||||| |||| || |||| ||||||||||||||| |||| || |||||||||| |
|
|
| T |
28736569 |
aatcaacctgatactgaatccgtgttctacgttcatccaagagaaggaccgaattcagtgcttgtagctcctccattggatggatctaattacctcgcat |
28736668 |
T |
|
| Q |
332 |
ggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgc |
431 |
Q |
| |
|
||||| | |||||||||||||||||||| || ||||| |||||||| ||||||| | |||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28736669 |
ggagtcgttccatgattcgagcttttggcgcgaaaaacaaattgaaattcattgattgatctatggagattccagatgaagatgatttgaatcgcaatgc |
28736768 |
T |
|
| Q |
432 |
atgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgct |
530 |
Q |
| |
|
||||||| ||| || ||| | ||||| || ||||| |||| || | | | ||||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
28736769 |
ctgggaacgttgtaaccatctccttcagtcttggatcatcaattcagctactcctcaaattgcacaaaccctagtttttcatgaaaacgccattgatgcg |
28736868 |
T |
|
| Q |
531 |
ttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcagtat |
630 |
Q |
| |
|
| ||| || || ||||| || ||||| || || ||| | ||||| ||||||||||| ||||| || ||||| | | |||| ||||||||||||||||| | |
|
|
| T |
28736869 |
tggttggatcttaaagaacgcttctctaaagcagatcgtattcgtattgctactcttcgttctaagatcaataatctgaagcaaggttcaaaatcagtgt |
28736968 |
T |
|
| Q |
631 |
tggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
28736969 |
tagactacttcactgaaatgaaaactctttgggaagagttgaattcccatcgtccaatgc |
28737028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 319 - 690
Target Start/End: Complemental strand, 4648021 - 4647649
Alignment:
| Q |
319 |
aactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatt |
418 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||| || || ||||||||||| | | |||||||||||| ||| ||||| || |||| |
|
|
| T |
4648021 |
aactacctcgcatggagtcgttccatgattctcgcttttggtgcgaagaacaaattgaagtttgtcgatggatccatggaacttccagatgaggaagatt |
4647922 |
T |
|
| Q |
419 |
tgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaa |
517 |
Q |
| |
|
| ||||||| ||| ||||||| ||||||||| | |||| |||||||| |||| || ||| | |||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
4647921 |
tcaatcgcagtgcctgggaacattgcaatcacctaattcagtcatggattatcaattcagttactcctcaaattgaacaaactctggttttccatgaaaa |
4647822 |
T |
|
| Q |
518 |
cgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggt |
617 |
Q |
| |
|
| |||||||||||| |||||| || ||||| ||||| || |||| ||| ||||| |||||||| || ||||| || ||||||| |||||| |||||| |
|
|
| T |
4647821 |
caccattgatgcttggttagatctaaaagaacgtttttccaaggtagatcacattcgtattgctacgcttcgttctaagatcaacaatttgaagcaaggt |
4647722 |
T |
|
| Q |
618 |
tcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
|| || | ||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
4647721 |
tctaagttagttttggattactttactgaaatgaaaactctttgggaagagttgaattcacaccgtccaatgc |
4647649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 3137792 - 3137718
Alignment:
| Q |
20 |
tccataacatggtatctatag--tttttcttcccatttccatggcggaagttagttacagtttcattcttcatca |
92 |
Q |
| |
|
|||||||||||||||||| || ||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3137792 |
tccataacatggtatctagagctttttttttctcatttccatggcgggagttagttacagtttcattcttcatca |
3137718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 24674482 - 24674533
Alignment:
| Q |
20 |
tccataacatggtatctatagtttttcttcccatttccatggcggaagttag |
71 |
Q |
| |
|
||||||| |||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
24674482 |
tccataagatggtatctagagcttttcttctcatttccatggtggaagttag |
24674533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 49728217 - 49728143
Alignment:
| Q |
596 |
aatcaacagtttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagtt |
670 |
Q |
| |
|
|||||||| | | ||||| ||| ||||||| || ||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
49728217 |
aatcaacaatctcaaacagggtgcaaaatctgtcttggattacttcactgaaatgaagtccctttgggaaaagtt |
49728143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 229 - 690
Target Start/End: Complemental strand, 21811155 - 21810693
Alignment:
| Q |
229 |
caaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcg |
328 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||| |||| || || | |||||||||||| |||| || ||||||| |
|
|
| T |
21811155 |
caaaatcaaccggacactgaatccgttttctatgttcatccaagtgaaggaccgaattctgttcttatttcacctccattggatggatcgaattacctcg |
21811056 |
T |
|
| Q |
329 |
catggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaa |
428 |
Q |
| |
|
| |||||| | ||||||||||| || ||||| || || || |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
21811055 |
cttggagtcgttccatgattcgtgcgtttggcgcgaagaacaaattgaagttcattgatggatccatggagattcctgatgaagatgatttgaatcgcaa |
21810956 |
T |
|
| Q |
429 |
tgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgat |
527 |
Q |
| |
|
|| ||||||| |||||||||| | ||||||| ||||| |||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
21810955 |
cgcttgggaacgttgcaatcatcttgttcaatcctggattatcaactctgtttcacctcaaattgctcaaactctcgttttccatgaaaacgccattgat |
21810856 |
T |
|
| Q |
528 |
gctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcag |
627 |
Q |
| |
|
|||| || ||| || || || || ||||| || |||||| | ||||| || ||| |||| || | |||||||||| |||| |||||||| ||||||| |
|
|
| T |
21810855 |
gcttggtcagatcttaaggaacgcttctccaaagctgatcgaattcgcatagcttctcttcgctttaaaatcaacaaaatgaagcaaggttctaaatcag |
21810756 |
T |
|
| Q |
628 |
tattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
21810755 |
tgttagaatacttcactgaaatgaaaactctgtgggaagagttgaattctcattgacctatgc |
21810693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 225 - 676
Target Start/End: Complemental strand, 27522040 - 27521588
Alignment:
| Q |
225 |
tcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactac |
324 |
Q |
| |
|
||||||||||||||| | | |||||| |||||||| |||||||||| ||||| | |||| |||||||||||||||||| |||||| ||||||| ||| |
|
|
| T |
27522040 |
tcgccaaaatcaaccggacagtgaatccgttttctatgttcatccaatcgaaggtccaaattctgttattgttgctcctcctttggatggatcaaattac |
27521941 |
T |
|
| Q |
325 |
ctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatc |
424 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||| |||||| ||||| |||| ||||||||| || | |||| |
|
|
| T |
27521940 |
ctcgcatggagtcgttccatgattcgagcttttggcgcgaaaaacaaattgaaattcattgatggatctatggagattcctgatgaagacgacctaaatc |
27521841 |
T |
|
| Q |
425 |
gcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccat |
523 |
Q |
| |
|
| | ||||||||||| ||||||||| | |||||||||||||||||| || |||||||| |||||||| |||||||| || || ||||||||||||| |
|
|
| T |
27521840 |
gaagtgcatgggaacgatgcaatcatcttattcaatcatggataatcaattcggtttcaccgcaaattgcgcaaactctggtgtttcatgaaaacgccat |
27521741 |
T |
|
| Q |
524 |
tgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaa |
623 |
Q |
| |
|
|||||| | || || |||| ||| || || | || | |||| | || |||||| ||||| | |||||||||||||| | |||||||||||||| || |
|
|
| T |
27521740 |
tgatgcatggtctgatctcagagaacgctttgctaaagttgattgaatccgaatttctactttgcgttccaaaatcaattgcttgaaacaaggttctaag |
27521641 |
T |
|
| Q |
624 |
tcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattc |
676 |
Q |
| |
|
| |||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27521640 |
actgtattggaatatttcactgaaatgaaaactctctgggaagagttgaattc |
27521588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 244 - 676
Target Start/End: Original strand, 19698255 - 19698688
Alignment:
| Q |
244 |
actgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcgcatggagttgctcca |
343 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| || || | |||| | ||| | |||||||||||| || | |||||||||||||||||| | |||| |
|
|
| T |
19698255 |
actgaatctgtcttctacattcatccaagtgaagaaccaaactctgttttggttacacctccattggatggaacgaactacctcgcatggagtcgttcca |
19698354 |
T |
|
| Q |
344 |
tgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgcatgggaa-cttg |
442 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||| ||| | |||||| || |
|
|
| T |
19698355 |
tgattcgagcttttggcgcgaaaaacaaattgaaatttgttgatggatctatggagattccaaatgaagacgatttgaatcgtaatacttgggaatgatg |
19698454 |
T |
|
| Q |
443 |
caatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgctttgttagaactc |
542 |
Q |
| |
|
|||||| | ||||||| ||||| || | | |||||||||||| ||| | ||||| | |||||| ||||||||||||||||||||| || || || |
|
|
| T |
19698455 |
caatcacctcattcaatcgtggattattaactctgtttcacctcagattactcaaaccatagttttccatgaaaacgccattgatgcttggtctgatctt |
19698554 |
T |
|
| Q |
543 |
aaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttca |
642 |
Q |
| |
|
||||| || ||||| || ||||||| |||| || || | || ||||| || ||||| | ||||||||||||| |||||||| || || || |||| |
|
|
| T |
19698555 |
aaagaacgcttctccaaagctgataaaattcctataacttcacttcgttctaagatcaataacatgaaacaaggttctaaatcagtgttagaatatttca |
19698654 |
T |
|
| Q |
643 |
ctgaaatgaaaactctttgggaagagttgaattc |
676 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
19698655 |
ctgaaatgaatactctttgggaagagttgaattc |
19698688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 229 - 690
Target Start/End: Original strand, 16984796 - 16985258
Alignment:
| Q |
229 |
caaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcg |
328 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||| |||| || || | |||||||||||| |||| || ||||||| |
|
|
| T |
16984796 |
caaaatcaaccggacactgaatccgttttctatgttcatccaagtgaaggaccaaattctgttcttatttcacctccattggatggatcgaattacctcg |
16984895 |
T |
|
| Q |
329 |
catggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaa |
428 |
Q |
| |
|
| |||||| | || |||||||| || ||||| || || || |||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
16984896 |
cttggagtcgttctatgattcgtgcgtttggcgcgaagaacaaattgaagttcattgatggatccatggagattcctgatgaagatgatttgaaccgcaa |
16984995 |
T |
|
| Q |
429 |
tgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgat |
527 |
Q |
| |
|
|| ||||||| |||||||||| | ||||||| ||||| |||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
16984996 |
cgcttgggaacgttgcaatcatcttgttcaatcctggattatcaactctgtttcacctcaaattgctcaaactctcgtttttcatgaaaacgccattgat |
16985095 |
T |
|
| Q |
528 |
gctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcag |
627 |
Q |
| |
|
|||| || ||| || || || || || || || ||||||| ||||| || ||| |||| || || |||||||||| |||| ||||||| ||||||| |
|
|
| T |
16985096 |
gcttggtcagatcttaaggaacgcttttccaaagctgatataattcgcatagcttctcttcgctctaaaatcaacaacatgaagcaaggttttaaatcag |
16985195 |
T |
|
| Q |
628 |
tattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
16985196 |
tgttagaatacttcactgaaatgaaaactctgtgggaagagttgaattctcatcgacctatgc |
16985258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 10636695 - 10636759
Alignment:
| Q |
588 |
cgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaa |
652 |
Q |
| |
|
||||| || ||||| | |||||||||||| |||||||| || |||||||| |||||||||||||| |
|
|
| T |
10636695 |
cgttctaacatcaataatttgaaacaaggatcaaaatctgttttggattatttcactgaaatgaa |
10636759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 23970279 - 23970316
Alignment:
| Q |
401 |
ttcatgatgaagatgatttgaatcgcaatgcatgggaa |
438 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
23970279 |
ttcatgatgaagatgatttgaatcggattgcatgggaa |
23970316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 5237913 - 5237977
Alignment:
| Q |
588 |
cgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaa |
652 |
Q |
| |
|
||||| || ||||| | |||||||||||| | |||||| || |||||||| |||||||||||||| |
|
|
| T |
5237913 |
cgttctaacatcaataatttgaaacaaggattaaaatctgttttggattatttcactgaaatgaa |
5237977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 228 - 676
Target Start/End: Original strand, 23955380 - 23955829
Alignment:
| Q |
228 |
ccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctc |
327 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| ||||||||||| ||||| | |||| |||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
23955380 |
ccaaaatcaaccggacactgaatccgttttctatgttcatccaagcgaaggtccaaattctgttattgttgctcctcctttggatggatcaaattacctc |
23955479 |
T |
|
| Q |
328 |
gcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgca |
427 |
Q |
| |
|
||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||| |||||| ||||| |||| | |||||||||| | ||||| | |
|
|
| T |
23955480 |
gcatggagtcgttccatgattcgagcttttggcgcgaaaaacaaattgaaattcattgatggatctatggagattccttatgaagatgacctaaatcgaa |
23955579 |
T |
|
| Q |
428 |
atgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattga |
526 |
Q |
| |
|
| ||||||||| ||||||||| | || ||||||||||||||| || |||||||| |||||||| |||||||| || || |||| ||||||||||| |
|
|
| T |
23955580 |
gttcatgggaacgatgcaatcatcttattaaatcatggataatcaattcggtttcaccgcaaattgcgcaaactctggtgtttcatgacaacgccattga |
23955679 |
T |
|
| Q |
527 |
tgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatca |
626 |
Q |
| |
|
||| | || || |||||||| || || | | |||||| | || |||||||||||| | |||||||||||||| || |||||||||||||| || | |
|
|
| T |
23955680 |
tgcatggtatgatctcaaagaacgctttgctcaagctgatcgaatccgaattgctactttgcgttccaaaatcaatagcttgaaacaaggttctaagacc |
23955779 |
T |
|
| Q |
627 |
gtattggattacttcactgaaatgaaaactctttgggaagagttgaattc |
676 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23955780 |
gtgttggattatttcactgaaatgaaaactctttaggaagagttgaattc |
23955829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 242 - 690
Target Start/End: Complemental strand, 26468831 - 26468382
Alignment:
| Q |
242 |
atactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcgcatggagttgctc |
341 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| |||| |||| | ||| | |||| ||||||| || | || ||||||||||||||| |||| |
|
|
| T |
26468831 |
atactgaatcggtcttttacgttcatccaagcgaaggaccgaattctgttttggttacacctctattggatggaacgaattacctcgcatggagtcgctc |
26468732 |
T |
|
| Q |
342 |
catgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgcatgggaac-t |
440 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| || ||| ||||| ||||| |||| |||||||||||||||||||| | || ||||||| |
|
|
| T |
26468731 |
catgattcgagcttttgtcgtaaaaaacaaattgaaatttgttgatggatatatggagattccagatgaagatgatttgaatcgtagcgcttgggaacgc |
26468632 |
T |
|
| Q |
441 |
tgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgctttgttagaac |
540 |
Q |
| |
|
|||||||| | ||||||| ||||| |||| | ||||||||||| ||||| ||||| || |||||| ||||||||||| |||||| || || || | |
|
|
| T |
26468631 |
tgcaatcacctaattcaatcgtggattatcaactctgtttcacctccgattgctcaaaccctagttttccatgaaaacgccgttgatggttggtctgatc |
26468532 |
T |
|
| Q |
541 |
tcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattactt |
640 |
Q |
| |
|
| ||||| || ||||| || ||||||| ||||| || ||| | || ||||| || ||||| | ||||||||||||| |||||||| || || || || |
|
|
| T |
26468531 |
ttaaagaacgattctccaaagctgataaaattcgtatcgcttcacttcgttctaagatcaataacatgaaacaaggttctaaatcagtgttagaatattt |
26468432 |
T |
|
| Q |
641 |
cactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
26468431 |
cactgaaatgaaaactctttgggaagagttgaattcccataggcctatgc |
26468382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 293 - 690
Target Start/End: Original strand, 30582526 - 30582924
Alignment:
| Q |
293 |
ttgttgctcctccattggattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatc |
392 |
Q |
| |
|
||||| |||||| |||||| |||| ||||| |||||||||||| || |||||||| |||||||| | ||||| |||||||| || |||| ||| || |
|
|
| T |
30582526 |
ttgttactcctctcttggatggatccaactatctcgcatggagtcattcaatgattcgtgcttttggcgtgaaaaacaaattgaaatttattgatggttc |
30582625 |
T |
|
| Q |
393 |
catggatattcatgatgaagatgatttgaatcgcaatgcatgggaact-tgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaatt |
491 |
Q |
| |
|
||||| |||| ||||||| ||||| ||||||| | ||| ||||||| | ||||||| | |||| || ||||| |||| || |||||| |||||||| |
|
|
| T |
30582626 |
gatggagattcctgatgaaaatgatctgaatcgtagtgcgtgggaacgatacaatcatctaattcagtcctggatcatcaattcagtttcatctcaaatt |
30582725 |
T |
|
| Q |
492 |
gcacaaactctcgttttcaatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgtt |
591 |
Q |
| |
|
|| ||||| || ||||| ||||| |||||||||||||| |||||| |||||| || |||| || || | |||||| || || |||||||| || || | |
|
|
| T |
30582726 |
gctcaaacactggtttttcatgaatccgccattgatgcttggttagatctcaaaaagtgtttttctaaagttgatagaatacgcattgctacacttcgat |
30582825 |
T |
|
| Q |
592 |
ccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| || || |||||||| | ||| ||| | ||||| ||||| ||||||||||||||| | ||||||| |
|
|
| T |
30582826 |
ccacaatcaacaacttgaaacaaggttcaaaatatgttttagattactttattgagatgcatactctatgggaggagttgaattctcatagacctatgc |
30582924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 232 - 690
Target Start/End: Original strand, 34064987 - 34065446
Alignment:
| Q |
232 |
aatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcgcat |
331 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||| ||||||| |||| || |||| ||| |||||||||| |||| || |||||||||| |
|
|
| T |
34064987 |
aatcaacctgatactgaatccgtgttctacgttcatccaagcgaaggaccgaattcagtgtttgtaactcttccattggatggatccaattacctcgcat |
34065086 |
T |
|
| Q |
332 |
ggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgc |
431 |
Q |
| |
|
||| | | ||||||||||||||||||||||| ||||| |||||||| || |||| |||||| ||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
34065087 |
ggaatcgttccatgattcgagcttttggtgcgaaaaacaaattgaaatttattgatggatctatggagattccagatgaagatgatttgaatcgcaacgc |
34065186 |
T |
|
| Q |
432 |
atgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgct |
530 |
Q |
| |
|
| ||||| ||| |||||| | ||||| || ||||| |||| || ||| | ||||||||||| ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
34065187 |
ctaggaacattgtaatcatctccttcagtcttggatcatcaattcagttactcctcaaattgctcaaaccctagtttttcatgaaaacgccattgatgcg |
34065286 |
T |
|
| Q |
531 |
ttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcagtat |
630 |
Q |
| |
|
| ||| | || ||||| || ||||| || || ||| | ||||| ||||||||||| ||||| || ||||| | | |||| ||||||||||||||||| | |
|
|
| T |
34065287 |
tggttgtatcttaaagaacgcttctctaaagcagatcgtattcgtattgctactcttcgttctaagatcaataatctgaagcaaggttcaaaatcagtgt |
34065386 |
T |
|
| Q |
631 |
tggattacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34065387 |
tagactacttcactgaaatgaaaactctttgggaagagttgaattcccatcgtccaatgc |
34065446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 214 - 676
Target Start/End: Complemental strand, 20854115 - 20853653
Alignment:
| Q |
214 |
ttcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggatt |
313 |
Q |
| |
|
|||| ||||| ||||||||||||||| | |||||||||||||||||||||||| | |||||||| | |||| |||| ||||||||||||| ||||| |
|
|
| T |
20854115 |
ttcaccatgcctcgccaaaatcaaccggacactgaatctgttttctacgttcattcgagtgaaggtccaaattttgttgttgttgctcctcctctggatg |
20854016 |
T |
|
| Q |
314 |
gatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaaga |
413 |
Q |
| |
|
| || || || ||||||||||| | ||||||||||||| |||||| || || || |||||||| ||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
20854015 |
gttcgaattatatcgcatggagtcgttccatgattcgagattttggcgcgaagaacaaattgaaattcattgatggatccatggaaattcctgatgaaga |
20853916 |
T |
|
| Q |
414 |
tgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaat |
512 |
Q |
| |
|
||| |||||||| ||||||||||| | ||||||||| | |||||||||||||||||| || |||||| ||||||||||||||||| || || || |
|
|
| T |
20853915 |
tgacttgaatcgaaatgcatgggagcgatgcaatcatcttattcaatcatggataatcaattcgatttcactgcaaattgcacaaactcttgtatttcat |
20853816 |
T |
|
| Q |
513 |
gaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaac |
612 |
Q |
| |
|
|||||||||| |||||||| || || ||||| || ||||| | || | || ||| ||||||||||||||| | ||||||||||||| | ||||||| |
|
|
| T |
20853815 |
gaaaacgccactgatgcttggtctgatctcaaggaacgttttgctaaagttgttagaattcgaattgctact-ttggttccaaaatcaataacttgaaac |
20853717 |
T |
|
| Q |
613 |
aaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattc |
676 |
Q |
| |
|
||||||| || | || ||||| || ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
20853716 |
aaggttctaagactgtgttggaatatttcactgaaataaaaactctctgggaagagttgaattc |
20853653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 307 - 679
Target Start/End: Original strand, 14611631 - 14612004
Alignment:
| Q |
307 |
ttggattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatg |
406 |
Q |
| |
|
|||||| |||| || ||||||||||||||| |||||||||||||||||||||| || || || ||||||||||| ||| ||| |||||||| ||| || |
|
|
| T |
14611631 |
ttggatggatccaattacctcgcatggagtcgctccatgattcgagcttttggcgcgaagaacaaattgaagtttgttgatggttccatggaagttcttg |
14611730 |
T |
|
| Q |
407 |
atgaagatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgt |
505 |
Q |
| |
|
|||| |||||||||||||| | || ||||||| || |||||| | ||||||||||||| || | | ||||||||| |||||||| ||||| | || |
|
|
| T |
14611731 |
atgaggatgatttgaatcgaagcgcttgggaacgatgtaatcatcttattcaatcatggattattaactctgtttcaccacaaattgctcaaacattggt |
14611830 |
T |
|
| Q |
506 |
tttcaatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagt |
605 |
Q |
| |
|
||| |||||| ||||||||| |||| | | || | || || |||||||| || |||||||| || | || |||||||| || |||| ||| |||| | |
|
|
| T |
14611831 |
tttttatgaaaccgccattgaagcttggcttgaccataaggaacgtttctccaaagctgatagaatacacatagctactcttcgatccacaattaacaat |
14611930 |
T |
|
| Q |
606 |
ttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctca |
679 |
Q |
| |
|
||||| |||||||| ||||| || | ||||| || ||||| ||| ||||| ||||| || ||||||||||| |
|
|
| T |
14611931 |
ttgaagcaaggttctaaatctgttctagattattttactgagatgcgtactctatgggaggaattgaattctca |
14612004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 246 - 682
Target Start/End: Original strand, 28558259 - 28558696
Alignment:
| Q |
246 |
tgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttgctcctccattggattgatcaaactacctcgcatggagttgctccatg |
345 |
Q |
| |
|
|||||| || |||||| |||||||||||||||| | || | ||| || || |||||| |||| | || ||||||| |||||||||||| | || ||| |
|
|
| T |
28558259 |
tgaatcagtgttctacattcatccaagtgaaggtccaaactcagttcttcttactcctctcttggttggaccaaactatctcgcatggagtcgttcaatg |
28558358 |
T |
|
| Q |
346 |
attcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgcatgggaact-tgca |
444 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| || ||| ||| || ||||| |||| |||||||||||||||||| || | ||| ||||||| |||| |
|
|
| T |
28558359 |
attcgtgcttttggcgcgaaaaacaaattgaaatttgttgatggttctatggagattcctgatgaagatgatttgaaccgtagtgcctgggaacgatgca |
28558458 |
T |
|
| Q |
445 |
atcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgctttgttagaactcaa |
544 |
Q |
| |
|
||||| | || | ||||| || |||| || |||||| | |||||| | |||| ||||| ||||| |||||||||||||| |||||| ||||| |
|
|
| T |
28558459 |
atcatctcatttagtcatgcattatcaattcagtttcatcgcaaatttcttaaacatcggtttttcatgaatccgccattgatgcttggttagatctcaa |
28558558 |
T |
|
| Q |
545 |
agagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttcact |
644 |
Q |
| |
|
| || |||| || || | |||||| || | |||||||| || || |||| |||||||| ||||||||||||||||||| || || |||||||||||| |
|
|
| T |
28558559 |
atagtgtttttctaaagttgatagaatatgtattgctacacttcgatccacaatcaacaacttgaaacaaggttcaaaatatgttttagattacttcact |
28558658 |
T |
|
| Q |
645 |
gaaatgaaaactctttgggaagagttgaattctcatcg |
682 |
Q |
| |
|
|| ||| ||||| ||||| || |||||||||||||| |
|
|
| T |
28558659 |
gagatgtgtactctgtgggaggaattgaattctcatcg |
28558696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 454 - 549
Target Start/End: Original strand, 12299429 - 12299524
Alignment:
| Q |
454 |
ttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttcaatgaaaacgccattgatgctttgttagaactcaaagagc |
549 |
Q |
| |
|
||||||||||||| |||| || ||||| || |||||| | ||||| || |||||| ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
12299429 |
ttcaatcatggattatcaattcagtttcgccacaaatttctcaaacacttgttttccatgaattcgccattgatgcttggttagatctcaaagagc |
12299524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 14813371 - 14813435
Alignment:
| Q |
588 |
cgttccaaaatcaacagtttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaa |
652 |
Q |
| |
|
||||| || ||||| | |||||||||||| |||||||| || |||||||| |||||||||||||| |
|
|
| T |
14813371 |
cgttctaacatcaataatttgaaacaaggatcaaaatctgttttggattatttcactgaaatgaa |
14813435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 299 - 672
Target Start/End: Original strand, 15939896 - 15940271
Alignment:
| Q |
299 |
ctcctccattggattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatgga |
398 |
Q |
| |
|
||||||| ||||| |||| ||| |||||||||||||| |||||||||||| ||||||||| || | |||||| ||||| ||||||| ||||||| |||| |
|
|
| T |
15939896 |
ctcctcctctggatggatcgaacaacctcgcatggagtcgctccatgattcaagcttttggcgcgagaaataagttgaaattcattgatggatccttgga |
15939995 |
T |
|
| Q |
399 |
tattcatgatgaagatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaa |
497 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
15939996 |
gatttctgatgaagatgacttgaatcgcaatgcatgggaacgttgcaatcatctaattcaatcttggataatcaattttgtttcacctcaaattgcacaa |
15940095 |
T |
|
| Q |
498 |
actctcgttttcaatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaa |
597 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| || ||| || | || ||||| || || |||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
15940096 |
actcttgtttttcatgaaaacgccattgatgcttggtcagatcttagtgaacgtttttctaaagctgatagaatttgtattgctatgttgcgatccaaaa |
15940195 |
T |
|
| Q |
598 |
tcaacagtttgaaacaaggttc-aaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttga |
672 |
Q |
| |
|
|||||| |||||||||||||| |||| | || || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15940196 |
tcaacaacttgaaacaaggttcaaaaaactgtgttcgattatttcactgaaatgaaaactctttgggaagagttga |
15940271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 307 - 679
Target Start/End: Original strand, 12078 - 12451
Alignment:
| Q |
307 |
ttggattgatcaaactacctcgcatggagttgctccatgattcgagcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatg |
406 |
Q |
| |
|
|||||| |||| || ||||||||||||| | | ||||||||||||||||| || || || || ||||||||||| ||| ||| ||||||||| ||| || |
|
|
| T |
12078 |
ttggatggatccaattacctcgcatggaatcgttccatgattcgagctttgggcgcgaagaacaaattgaagtttgttgatggttccatggatgttcctg |
12177 |
T |
|
| Q |
407 |
atgaagatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgt |
505 |
Q |
| |
|
|||| |||||||||||||| | ||| ||||||| || |||||| | ||||||||||||| || | | |||||||||||||||||| |||||| | || |
|
|
| T |
12178 |
atgaggatgatttgaatcgaagtgcttgggaacgatgaaatcatcttattcaatcatggattattaactctgtttcacctcaaattgctcaaactttggt |
12277 |
T |
|
| Q |
506 |
tttcaatgaaaacgccattgatgctttgttagaactcaaagagcgtttctcaaaggctgataggattcgaattgctactctccgttccaaaatcaacagt |
605 |
Q |
| |
|
||| |||||| ||||||||| |||| | | || || || || |||||||| || |||||||| || || || |||||||| || |||| || |||| | |
|
|
| T |
12278 |
ttttcatgaaaccgccattgaagcttggcttgaccttaaggaacgtttctccaaagctgatagaatacgcatagctactcttcgatccatgattaacaat |
12377 |
T |
|
| Q |
606 |
ttgaaacaaggttcaaaatcagtattggattacttcactgaaatgaaaactctttgggaagagttgaattctca |
679 |
Q |
| |
|
||||| |||||||| ||||| || | |||||||| ||||| ||| ||||| ||||| || ||||||||||| |
|
|
| T |
12378 |
ttgaagcaaggttctaaatcggttatagattactttactgagatgcgtactctatgggaggaattgaattctca |
12451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 352 - 492
Target Start/End: Complemental strand, 39960 - 39819
Alignment:
| Q |
352 |
gcttttggtgcaaaaaataaattgaagttcattgctggatccatggatattcatgatgaagatgatttgaatcgcaatgcatgggaa-cttgcaatcatt |
450 |
Q |
| |
|
||||| ||||| || || |||||||||||||||| ||||| ||||| |||| |||||||||| |||||||| |||| || |||||| ||| ||||||| |
|
|
| T |
39960 |
gctttaggtgcgaagaacaaattgaagttcattgatggatatatggagattcctgatgaagattatttgaattgcaacgcgtgggaatgttgtaatcatt |
39861 |
T |
|
| Q |
451 |
tgcttcaatcatggataatcatttatgtttcacctcaaattg |
492 |
Q |
| |
|
|| ||||||| ||||| |||| ||||||| | ||| |||||| |
|
|
| T |
39860 |
tgattcaatcttggattatcaattatgttactccttaaattg |
39819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 553
Target Start/End: Original strand, 6300 - 6442
Alignment:
| Q |
412 |
gatgatttgaatcgcaatgcatgggaac-ttgcaatcatttgcttcaatcatggataatcatttatgtttcacctcaaattgcacaaactctcgttttca |
510 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| | | || || |||||| | | |||||| |||||||| ||||||||| |||||||| |
|
|
| T |
6300 |
gatgatttgaatcgcaattcatgggaacattgcaatcatctcatccattcttggatacctaactctgtttctcctcaaatcgcacaaactatcgttttcc |
6399 |
T |
|
| Q |
511 |
atgaaaacgccattgatgctttgttagaactcaaagagcgttt |
553 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
6400 |
atgaaagagccattgatgtcttagaagaactcaaagagcgttt |
6442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 1167 - 1221
Alignment:
| Q |
636 |
tacttcactgaaatgaaaactctttgggaagagttgaattctcatcgtcctatgc |
690 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | ||||| ||||| ||||||| |
|
|
| T |
1167 |
tacttcactgagatgaaatctctttgggaagagctcaattcccatcgccctatgc |
1221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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