View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826_high_22 (Length: 291)

Name: NF2826_high_22
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826_high_22
NF2826_high_22
[»] chr3 (9 HSPs)
chr3 (155-291)||(5375245-5375381)
chr3 (155-291)||(5356832-5356968)
chr3 (155-285)||(5363449-5363579)
chr3 (162-251)||(5369547-5369636)
chr3 (18-64)||(5375472-5375518)
chr3 (177-239)||(7179028-7179090)
chr3 (18-64)||(5363668-5363714)
chr3 (178-239)||(8399989-8400055)
chr3 (199-240)||(7119982-7120023)
[»] chr4 (1 HSPs)
chr4 (192-240)||(36590356-36590404)
[»] chr6 (3 HSPs)
chr6 (197-240)||(33839161-33839204)
chr6 (189-239)||(7174411-7174461)
chr6 (197-238)||(33843077-33843118)
[»] chr5 (1 HSPs)
chr5 (199-240)||(28092141-28092182)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 155 - 291
Target Start/End: Complemental strand, 5375381 - 5375245
Alignment:
Q  155 tttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagctttaat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375381 tttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagctttaat 5375282  T
Q  255 taactgaattccggcaccttctttcttgaacttgcga 291  Q
    ||||||||||| |||||||||||||||||||||||||    
T  5375281 taactgaattctggcaccttctttcttgaacttgcga 5375245  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 155 - 291
Target Start/End: Complemental strand, 5356968 - 5356832
Alignment:
Q  155 tttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagctttaat 254  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  |    
T  5356968 tttcaccttaatcatcattatctataatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccataaggtatgaatttatctttctt 5356869  T
Q  255 taactgaattccggcaccttctttcttgaacttgcga 291  Q
     ||  |||||||||||| |  ||||||||||||||||    
T  5356868 caaacgaattccggcacgtgttttcttgaacttgcga 5356832  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 5363579 - 5363449
Alignment:
Q  155 tttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagctttaat 254  Q
    ||||||||||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |    
T  5363579 tttcaccttaatcatcattattttttatgttaatctttgctaaaggtgagttttgaagcaaaaattccactactccagcaggtatgaatttagttttctt 5363480  T
Q  255 taactgaattccggcaccttctttcttgaac 285  Q
     || |||||||| | ||||||||| ||||||    
T  5363479 caaatgaattccagaaccttctttattgaac 5363449  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 5369636 - 5369547
Alignment:
Q  162 ttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtatgaatttagcttt 251  Q
    |||||||||||||| ||||| | ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||    
T  5369636 ttaatcatcattatttatgaagttaacctttgctaacggtgaggtttgaagcaaaaattccactactccaacaggtatgagtttatcttt 5369547  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 5375518 - 5375472
Alignment:
Q  18 tatatgaactcaaacaattagataattttcattttactagacaagta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5375518 tatatgaactcaaacaattagataattttcattttactagacaagta 5375472  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 7179090 - 7179028
Alignment:
Q  177 tatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtat 239  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||| |||||||||| ||||    
T  7179090 tatgatgttaacctttgctgatggtgagttttgaagcaaaaaatccagtactccatcaagtat 7179028  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 5363714 - 5363668
Alignment:
Q  18 tatatgaactcaaacaattagataattttcattttactagacaagta 64  Q
    ||||||||||||||||| |||   |||||||||||||||||||||||    
T  5363714 tatatgaactcaaacaagtaggacattttcattttactagacaagta 5363668  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 8399989 - 8400055
Alignment:
Q  178 atgatggtaatctttgctaacggtgagttttgaagcaaaaat-----tccactactccatcaggtat 239  Q
    |||||| ||| ||||||| | |||||||||||||||||||||     ||||||||||||||||||||    
T  8399989 atgatgttaacctttgctgatggtgagttttgaagcaaaaattaaagtccactactccatcaggtat 8400055  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 7120023 - 7119982
Alignment:
Q  199 ggtgagttttgaagcaaaaattccactactccatcaggtatg 240  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  7120023 ggtgagttttgaagcaaaaagtcgactattccatcaggtatg 7119982  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 36590356 - 36590404
Alignment:
Q  192 tgctaacggtgagttttgaagcaaaaattccactactccatcaggtatg 240  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||||||    
T  36590356 tgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatg 36590404  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 33839161 - 33839204
Alignment:
Q  197 acggtgagttttgaagcaaaaattccactactccatcaggtatg 240  Q
    ||||||||||||||||||| || ||||||| |||||||||||||    
T  33839161 acggtgagttttgaagcaagaagtccactattccatcaggtatg 33839204  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 7174411 - 7174461
Alignment:
Q  189 ctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtat 239  Q
    ||||||| |||||||||||||||| |||||||||| || ||||||| ||||    
T  7174411 ctttgctgacggtgagttttgaaggaaaaattccaatattccatcatgtat 7174461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 33843077 - 33843118
Alignment:
Q  197 acggtgagttttgaagcaaaaattccactactccatcaggta 238  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  33843077 acggtgagttttgaagcaagaagtccactattccatcaggta 33843118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 28092182 - 28092141
Alignment:
Q  199 ggtgagttttgaagcaaaaattccactactccatcaggtatg 240  Q
    ||||||||||||| |||||| ||||||| |||||||||||||    
T  28092182 ggtgagttttgaatcaaaaagtccactattccatcaggtatg 28092141  T

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