View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_high_27 (Length: 264)
Name: NF2826_high_27
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35026858 - 35026613
Alignment:
| Q |
1 |
agtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatcagctaaacttgtac |
100 |
Q |
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| T |
35026858 |
agtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatcagctaaacttgtac |
35026759 |
T |
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| Q |
101 |
ctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagtttccttgttgaagacagaaattgaagttcatgttgataaagcttgatagaacc |
200 |
Q |
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| T |
35026758 |
ctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagtttccttgttgaagatagaaattgaagttcatgttgataaagcttgatagaacc |
35026659 |
T |
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| Q |
201 |
atcagggtaccctgaaggtggtttcttgagatcatctacagttaat |
246 |
Q |
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| T |
35026658 |
atcagggtaccctgaaggtggtttcttgagatcatctacagttaat |
35026613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 35033831 - 35033634
Alignment:
| Q |
37 |
tcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatcagctaaacttgtacctatatgcaaacgatcgtataaaaatacaccacttc |
136 |
Q |
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| T |
35033831 |
tcagcatatggtccatcaacttcattgcaacctttgaaaccaactgcatctgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttc |
35033732 |
T |
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| Q |
137 |
cgaagacaagtttccttgttgaagacagaaattgaagttcatgttgataaagcttgatagaaccatcagggtaccctgaaggtggtttcttgagatca |
234 |
Q |
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| T |
35033731 |
caaatgcaattttccttgttgaagctaggaatcgaagttcgtgtttataaaacttgatgcaagaatcagggaaccctgaaggtggtttcatgatatca |
35033634 |
T |
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