View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_high_33 (Length: 247)
Name: NF2826_high_33
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_33 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 46313806 - 46313577
Alignment:
| Q |
18 |
caaagtccttcaaagtctgtttttctatctatgcaattatattgtgaaatatatgtgtaaatgtatttatttatatttagatgaaagaatgatgaaggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46313806 |
caaagtccttcaaagtctgtttttctatctatgcaattatattgtgaaatatatgtgtaaatatatttatttatatttagatgaaagaatgatgaaggat |
46313707 |
T |
|
| Q |
118 |
ttcaaagttggttaaatcagttgaaaaaatgtgaggcttggagttgagagctagctaagaggaggttataannnnnnnctataaaaagaagggacacgga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46313706 |
ttcaaagttggttaaatcagttgaaaaaatgtgaggcttggagttgagagctagctaagaggaggttataatttttttctataaaaagaagggacacgga |
46313607 |
T |
|
| Q |
218 |
aaagccaacctatgtatagcaatactctca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46313606 |
aaagccaacctatgtatagcaatactctca |
46313577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University