View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_high_6 (Length: 467)
Name: NF2826_high_6
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 26880157 - 26879714
Alignment:
| Q |
1 |
tgggtttatttaaaggaatgaaccgctgtgtaggagtaggaagaaaagacactgatcgataagatgatactacccacatgcattgtcacgcacatttgaa |
100 |
Q |
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| T |
26880157 |
tgggtttatttaaaggaatgaaccgctgtgtaggagcaggaagaaaagacactgagcgataagatgatactacacacatgcattgtcacgcacatttgaa |
26880058 |
T |
|
| Q |
101 |
accgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaggttttatcttcgtacttactagatctttgcgtttt |
200 |
Q |
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| T |
26880057 |
accgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaagttttatcttcgtacttactagatctttgcgtttt |
26879958 |
T |
|
| Q |
201 |
ttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaatttgcttgttgatgaattaaagctagcagaaattggcccaaaatttgaac |
300 |
Q |
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| T |
26879957 |
ttctgcttttgctacatgtcatatttgttttgatctttattgccacagaatttgcttgttgatgaattaaagctagcagaaattggcccaaaatttgaac |
26879858 |
T |
|
| Q |
301 |
atcatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactttattatgatatttatcccatatacc |
400 |
Q |
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| T |
26879857 |
attatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactttattatgatatttatcccatatacc |
26879758 |
T |
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| Q |
401 |
tacttcctcaaattttcatttcacctacaaggggtttttaattta |
445 |
Q |
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| T |
26879757 |
tacttcctcaaattttcatttcacctacaa-gggtttttaattta |
26879714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 40249539 - 40249366
Alignment:
| Q |
154 |
ttcaaatgtcaggttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaattt |
253 |
Q |
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|||||| ||||| ||||||||| |||||| | |||||| | |||||||| |||| ||| ||||||||||||||||||||| | ||| ||| ||||| |
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| T |
40249539 |
ttcaaacgtcagcttttatctttgtacttgcaagatctcaacactttttctgattttccta-atgtcatatttgttttgatct--actgcaacagaattt |
40249443 |
T |
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| Q |
254 |
gcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaaca |
330 |
Q |
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| T |
40249442 |
gcttgttgatgaattgaagctagcagaaattggcccaaaatttgaacatcacgaggtgttccctgcacgaactaaca |
40249366 |
T |
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