View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_high_8 (Length: 458)
Name: NF2826_high_8
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 45936004 - 45935576
Alignment:
| Q |
17 |
agttacatgcttttaatgatataaaaattacgagtgaaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaagatgttacct |
116 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936004 |
agttaaatggttttaatgatataaaaattacgagtgaaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaagatgttacct |
45935905 |
T |
|
| Q |
117 |
gaaaaatataataaaacatcattcagttttattagtgtctttctttccagcaagaatccttgaaatctgaagtcctctactacatgcttgattgaatagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45935904 |
gaaaaatataataaaacatcattcagttttattagtgtctttctttccagcaagaatccttgaaatctgaagtcctctactacatgcttgattgaatagc |
45935805 |
T |
|
| Q |
217 |
aaccgggtttggaactccgacacaaatgggaaccatgataaaactgctgctggcatgaaaattatcaaccccattacatattcatatgctcttgaaagtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45935804 |
aaccgggtttggaactccgacacaaatgggaaccatgataaaactgctgctggcatgaaaattatcaaccccattacatattcatatgctcttgaaagtt |
45935705 |
T |
|
| Q |
317 |
ctctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagnnnnnnntgttataatttcagg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45935704 |
ctctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagaaaaaaatgttataatttcagg |
45935605 |
T |
|
| Q |
417 |
gattaaaatcatatttaaaccacaacttc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45935604 |
aattaaaatcatatttaaaccacaacttc |
45935576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 86 - 437
Target Start/End: Complemental strand, 15818016 - 15817667
Alignment:
| Q |
86 |
aaaatcatataggaaatgcaagatgttacctgaaaaatataataaaacatcattcagttttattagtgtctttctttccagcaagaatccttgaaatctg |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15818016 |
aaaatcatataggaaatgcaagatgttacctgaaaaatatgataaaacatcattcagttttgtaagtgtctttctttccagcaagaatcattgaaatctg |
15817917 |
T |
|
| Q |
186 |
aagtcctctactacatgcttgattgaatagcaaccgggtttggaactccgacacaaatgggaaccatgataaaactgctgctggcatgaaaattatcaac |
285 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
15817916 |
aagtcctctactaaatgcttgattgaatagcaaccgcgtttggaactccgacacaaatgggaaccacgataaaactgctgttggcatgaaaattatcaat |
15817817 |
T |
|
| Q |
286 |
cccattacatattcatatgctcttgaaagttctctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15817816 |
cccattacatattcatatgctcttgaaagttctctcactgaagcccatagtttcgcccacttcaagagtcccctacatgtttgtgcaatcttgattgcaa |
15817717 |
T |
|
| Q |
386 |
aagagaaagnnnnnnntgttataatttcagggattaaaatcatatttaaacc |
437 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15817716 |
aagag--agaaaaaaatgttataatttcagggattaaaatcatatttaaacc |
15817667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 43953280 - 43953349
Alignment:
| Q |
184 |
tgaagtcctctactacatgcttgattgaatagcaaccgggtttggaactccgacacaaatgggaaccatg |
253 |
Q |
| |
|
||||||||||| || ||||||| |||||||||| || ||||||||| || || |||||||||||||||| |
|
|
| T |
43953280 |
tgaagtcctctgctgaatgcttggttgaatagcagcctggtttggaattctgaaacaaatgggaaccatg |
43953349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 5164402 - 5164246
Alignment:
| Q |
17 |
agttacatgcttttaatgatataaaaattacgagtg-aaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaagatgttacc |
115 |
Q |
| |
|
||||| ||| ||| |||||||| | |||| | |||| |||||||||||| |||| | | |||||||||||||| | ||| |||| || || |||||||| |
|
|
| T |
5164402 |
agttaaatgatttcaatgatatgacaattgcaagtgtaaaaaatctttaaattggctgtgcatataaattaaactaata--ggaagtggaaaatgttacc |
5164305 |
T |
|
| Q |
116 |
tgaaaaatataataaaacatcattcagttttattagtgtctttctttccagcaagaatc |
174 |
Q |
| |
|
||||| ||| |||| | |||||| |||||| | ||||||||||||||| ||||||||| |
|
|
| T |
5164304 |
ggaaaattatgataacatatcatttagttttgtaagtgtctttctttccggcaagaatc |
5164246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 5191807 - 5191687
Alignment:
| Q |
53 |
aaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaagatgttacctgaaaaatataataaaacatcattcagttttattagt |
152 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||||||||| || || | || |||||||||||||| ||||||||| |||| | ||||||||||||| | ||| |
|
|
| T |
5191807 |
aaaaagtctttaaattgatggcacatataaattaaactcgtaaa--aattgcaagatgttacccgaaaaatatgataacatatcattcagttttgtaagt |
5191710 |
T |
|
| Q |
153 |
gtc-tttctttccagcaagaatc |
174 |
Q |
| |
|
||| ||| |||| |||||||||| |
|
|
| T |
5191709 |
gtcttttttttcaagcaagaatc |
5191687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University