View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_11 (Length: 448)
Name: NF2826_low_11
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 41393 - 40965
Alignment:
| Q |
1 |
atcaaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttggttatcaaacgtgtatttccttcgttagtttggtcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41393 |
atcaaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttggttatcaaacgtgtatttccttcgttagtttggtcatc |
41294 |
T |
|
| Q |
101 |
aaatatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgttaatatcttaaatcaaaattagaaaataaacagtcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41293 |
aaatatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgttaatatcttaaatcaaaattagaaaataaacagtcaatt |
41194 |
T |
|
| Q |
201 |
taatcccaaaacaaaactatcaatttttcgtcaatttagtctctaaaccgttaaaatcaactaaaatgtccctaaactatgctctcaatgtttaaaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193 |
taatcccaaaacaaaactatcaatttttcgtcaatttagtctctaaactgttaaaatcaactaaaatgtccctaaactatgctctcaatgtttaaaaaga |
41094 |
T |
|
| Q |
301 |
atagaatagagaagaaccttgacagagtaacccctgagcattagcttacgaacaacgatgcgaccgatacggctagtagcaccaacaacaagtacagtag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41093 |
atagaatagagaagaaccttgacagagtaacccctgagcattagcttacgaacaacgatgcgaccgatacggctagtagcaccaacaacaagtacagtag |
40994 |
T |
|
| Q |
401 |
tattctgagcaccagggatggcaaactca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40993 |
tattctgagcaccagggatggcaaactca |
40965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 46781682 - 46781727
Alignment:
| Q |
230 |
gtcaatttagtctctaaaccgttaaaatcaactaaaatgtccctaa |
275 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
46781682 |
gtcaatttagtccctaatctattaaaatcaactaaaatgtccctaa |
46781727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 33726477 - 33726525
Alignment:
| Q |
232 |
caatttagtctctaaaccgttaaaatcaactaaaatgtccctaaactat |
280 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
33726477 |
caatttagtcattaaactattaaaataaactaaaatgtccctaaactat |
33726525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 37160768 - 37160716
Alignment:
| Q |
214 |
aaactatcaatttttcgtcaatttagtctctaaaccgttaaaatcaactaaaa |
266 |
Q |
| |
|
||||||||| | | |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
37160768 |
aaactatcattctctcgttaatttagtctctaaactattaaaatcaactaaaa |
37160716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University