View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_12 (Length: 434)
Name: NF2826_low_12
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 25505137 - 25504993
Alignment:
| Q |
13 |
aaaatttgacgaagtaagaaaccacttaccatacattattaaggtgctaacaagtgactattgaacatattaaatagtaagcctttaaaaatatttgagt |
112 |
Q |
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| T |
25505137 |
aaaatttgacgaagtaagaaaccacttaccatacattattaaggtgctaacaagtgactattgaacatattaaatagtaagcctttaaaaatatttgagt |
25505038 |
T |
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| Q |
113 |
attaactgaatttatattaaggaccactagttagtcttaagctag |
157 |
Q |
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| T |
25505037 |
attaactgaattaatattaaggaccactagttagtcttaagctag |
25504993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 318 - 417
Target Start/End: Complemental strand, 25504821 - 25504720
Alignment:
| Q |
318 |
tgaaccactagctagtctggcattatgtacttttgcttagtgcatgaagcattatatttaatttattgtgcatcaaaagaat--atatgataaattatta |
415 |
Q |
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| T |
25504821 |
tgaaccactagctagtctggcattatgtacttttgcttagtgcatgaagcattatatttaatttattgtgaatcaaaagaatatatatgataaattatta |
25504722 |
T |
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| Q |
416 |
ac |
417 |
Q |
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|| |
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| T |
25504721 |
ac |
25504720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 25504946 - 25504868
Alignment:
| Q |
152 |
agctagcttacgaatgacctgaatttatattaagaaccttactatcgtcag-tttaagatcttgttacaaaattttacc |
229 |
Q |
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| T |
25504946 |
agctagcttacgaatgacctgaatttatattaagaacgttactatcgtcagttttaagatcttgttacaaaattttacc |
25504868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 25504855 - 25504821
Alignment:
| Q |
246 |
tcattaatttaagatcagattcactgctttgtctt |
280 |
Q |
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| T |
25504855 |
tcattaatttaagatcagattcactgctttgtctt |
25504821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 30969679 - 30969647
Alignment:
| Q |
14 |
aaatttgacgaagtaagaaaccacttaccatac |
46 |
Q |
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| T |
30969679 |
aaatttgacgaaataagaaaccacttaccatac |
30969647 |
T |
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