View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826_low_16 (Length: 385)

Name: NF2826_low_16
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826_low_16
NF2826_low_16
[»] chr2 (2 HSPs)
chr2 (1-385)||(8020965-8021344)
chr2 (288-385)||(22792281-22792378)
[»] chr3 (29 HSPs)
chr3 (3-385)||(28151785-28152164)
chr3 (40-385)||(11421393-11421736)
chr3 (1-385)||(17744126-17744503)
chr3 (1-385)||(19045446-19045823)
chr3 (124-385)||(27920463-27920719)
chr3 (256-385)||(30993721-30993850)
chr3 (38-164)||(28037611-28037737)
chr3 (256-385)||(8538731-8538860)
chr3 (256-385)||(27954559-27954688)
chr3 (46-183)||(8539081-8539218)
chr3 (120-385)||(27430598-27430870)
chr3 (256-385)||(28037895-28038024)
chr3 (254-385)||(28479471-28479602)
chr3 (254-385)||(28508654-28508785)
chr3 (256-385)||(28163032-28163161)
chr3 (38-112)||(27458741-27458815)
chr3 (256-385)||(28057568-28057697)
chr3 (256-385)||(28067993-28068122)
chr3 (19-111)||(11421140-11421232)
chr3 (43-139)||(26139089-26139185)
chr3 (40-139)||(28162792-28162891)
chr3 (256-385)||(18078847-18078976)
chr3 (38-139)||(26110202-26110303)
chr3 (38-143)||(26127278-26127383)
chr3 (121-165)||(18076983-18077027)
chr3 (351-385)||(27458443-27458477)
chr3 (38-143)||(26177328-26177433)
chr3 (280-385)||(28136724-28136829)
chr3 (67-139)||(26204494-26204566)
[»] scaffold0922 (1 HSPs)
scaffold0922 (38-385)||(1910-2253)
[»] scaffold1142 (1 HSPs)
scaffold1142 (38-129)||(530-621)
[»] scaffold0257 (1 HSPs)
scaffold0257 (280-385)||(19507-19612)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 8020965 - 8021344
Alignment:
Q  1 tcattttgaagttaaccttcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020965 tcattttgaagttaaccttcttctttcccaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccc 8021064  T
Q  101 aaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  8021065 aaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcattttttta 8021164  T
Q  201 aaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  8021165 aaattaattttctagtgctcaaatatgcataaacattatttcatgtac-----tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 8021259  T
Q  301 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8021260 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctctgttgactgatttccttgtta 8021344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 22792281 - 22792378
Alignment:
Q  288 aagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    ||||||| |||| ||||||| | ||||||||||| | || || ||| ||||| |||| | |   ||||| ||||||||||||||||||||| ||||||    
T  22792281 aagttctccttgtattgtcaaatgggagcttgagcaactggtctccgagaattatttggattacgagaacttgtctttgttgactgatttctttgtta 22792378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 28151785 - 28152164
Alignment:
Q  3 attttgaagttaacct-tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccca 101  Q
    ||||||||||| | || |||| |||| || ||||| ||||||||||||||||||||  |||||||||||| ||| ||||||| |||| | |||||| | |    
T  28151785 attttgaagtttagctctcttgtttcccatcttttgtcagtttctctaaatgatgataatgtcatgaaagcaagctcaaatactgaggatcagttttcaa 28151884  T
Q  102 aggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna 201  Q
    |||| ||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| || || ||||||||||||| | |               
T  28151885 aggatgataacatattagtttccaaatcaagaccctcttctattgcatctcagtttccttcaaagccttctgaaggtattttatttctttgttttatttt 28151984  T
Q  202 -aattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 300  Q
     ||||||||| || ||||| ||||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||||||||||||||||||||||      
T  28151985 taattaatttacttgtgcttaaatatgcataattattctttcctatactttca-----ggggacccttctcaaatagatgaagatttaagttcttctttt 28152079  T
Q  301 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
     |||||||  ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  28152080 gttgtcaccggggagcttgagaatctagtctccaataatcatttggctattgagaaattgtctttgttgactgacttccttgtta 28152164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 385
Target Start/End: Original strand, 11421393 - 11421736
Alignment:
Q  40 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||| ||||||||| | | ||| ||||||||||||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  140 tctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca------nnnnnnnnaaattaattttctagtgctcaaatatgcataaa 233  Q
    | ||||| |||||||| ||||| |||  ||  | ||||||||||||||| |||              || || ||||| | ||||  ||||||||||||     
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaattttattttattgtgcataaatatgcataat 11421592  T
Q  234 cattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaag---ggagcttgagaatctagtt 330  Q
     |||||||| | |||     | |||||||| |||||||||| || |||||||||      ||||||  ||||||||||   |||||||||||||||||||    
T  11421593 tattatttcctatac-----tttcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtt 11421681  T
Q  331 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  11421682 tccaagaaccatttggctattgagaacttgtctttgttgactgaattccttgtta 11421736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 17744503 - 17744126
Alignment:
Q  1 tcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttc 98  Q
    ||||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||    
T  17744503 tcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttc 17744404  T
Q  99 ccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnn 198  Q
    | ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||          
T  17744403 ctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttat 17744304  T
Q  199 nnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttctt 298  Q
       |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||    
T  17744303 ct-aattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttctt 17744213  T
Q  299 gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
       ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||||| ||||||    
T  17744212 tgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttctttgtta 17744126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 19045823 - 19045446
Alignment:
Q  1 tcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttc 98  Q
    ||||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||    
T  19045823 tcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttc 19045724  T
Q  99 ccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnn 198  Q
    | ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||          
T  19045723 ctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttat 19045624  T
Q  199 nnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttctt 298  Q
       |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||    
T  19045623 ct-aattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttctt 19045533  T
Q  299 gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
       ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||||| ||||||    
T  19045532 tgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttctttgtta 19045446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 385
Target Start/End: Original strand, 27920463 - 27920719
Alignment:
Q  124 caaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaa 222  Q
    |||||||||| |||||||||||| |||||||| |||||||||| || || ||||||||||||||  |||          ||||| ||||||  |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  223 atatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgaga 322  Q
    ||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||    
T  27920562 atatgcataattattctttcctatactttca-----ggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgaga 27920656  T
Q  323 atctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  27920657 atctagtctccaagaagcatttggctattgagaacttgtctttgttgactgacttccttgtta 27920719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 30993721 - 30993850
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    | ||||  |||||||| |||||||||||||    
T  30993821 acttgtacttgttgacggatttccttgtta 30993850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 28037611 - 28037737
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    ||||||| || |||||||||  |||||||||||||||| |||||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||    
T  28037611 tcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccct 28037710  T
Q  138 cttctattgaatctcagtgtccttcaa 164  Q
    ||||||||| |||||| | ||||||||    
T  28037711 cttctattgcatctcattttccttcaa 28037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 8538860 - 8538731
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    |  |||| ||||||||  ||||||||||||    
T  8538760 acatgtccttgttgaccaatttccttgtta 8538731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 27954559 - 27954688
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    | ||||||||||||||||||||||| ||||    
T  27954659 acttgtctttgttgactgatttcctagtta 27954688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 8539218 - 8539081
Alignment:
Q  46 tctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctatt 145  Q
    |||||||||||| | || |||||||||||| ||||||||| || |  ||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||    
T  8539218 tctaaatgatgatgttgccatgaaagtaagctcaaatattcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtatt 8539119  T
Q  146 gaatctcagtgtccttcaaagtctactcaaggtatttt 183  Q
      |||||||| |||||||||| || || ||||||||||    
T  8539118 ccatctcagtctccttcaaagccttctgaaggtatttt 8539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 385
Target Start/End: Complemental strand, 27430870 - 27430598
Alignment:
Q  120 tttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca-nnnnnnnnaaattaattttctagtgc 218  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| ||||||||||| |||          |||||||||||| ||||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgcttcattgtagttttaattaattttcttgtgc 27430771  T
Q  219 tcaaatatgcataaacattatttcatgtactctcatctcaggggaacct------tctcaaagagatgaagatttaagttcttcttgcattgtcacaagg 312  Q
    | || || ||||||  ||  | |  | |||| |  |  |||||||||||      ||||||| ||||||| |||| ||||| ||||    |||||||| |    
T  27430770 tgaagtaggcataattatattgttctttactatacttacaggggaaccttctcaatctcaaatagatgaatattttagttcgtctttggctgtcacaaag 27430671  T
Q  313 gagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    || || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  27430670 gaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgttgactgatttccttgtta 27430598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 28037895 - 28038024
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    | ||||||||||||||||||||| ||||||    
T  28037995 atttgtctttgttgactgatttctttgtta 28038024  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 385
Target Start/End: Complemental strand, 28479602 - 28479471
Alignment:
Q  254 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 353  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  354 gaaattgtctttgttgactgatttccttgtta 385  Q
    ||| |||||||||||||||| |||||||||||    
T  28479502 gaacttgtctttgttgactgctttccttgtta 28479471  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 385
Target Start/End: Complemental strand, 28508785 - 28508654
Alignment:
Q  254 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 353  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  354 gaaattgtctttgttgactgatttccttgtta 385  Q
    ||| |||||||||||||||| |||||||||||    
T  28508685 gaacttgtctttgttgactgttttccttgtta 28508654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 28163032 - 28163161
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 354  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  355 aaattgtctttgttgactgatttccttgtta 385  Q
    || ||||||||||||||||||||| ||||||    
T  28163131 aacttgtctttgttgactgatttctttgtta 28163161  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 27458815 - 27458741
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaa 112  Q
    |||||||||||||||||||| | |||||| |||||||| |||||||||||| | |||||||| || || ||||||    
T  27458815 tcagtttctctaaatgatgatgctgtcataaaagtaagctcaaatattgagaatcagtttcctaacgatgatgaa 27458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 28057568 - 28057697
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28057568 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28057667  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    |  |||||||||||||||||||| ||||||    
T  28057668 acgtgtctttgttgactgatttctttgtta 28057697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 28067993 - 28068122
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28067993 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28068092  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    |  |||||||||||||||||||| ||||||    
T  28068093 acgtgtctttgttgactgatttctttgtta 28068122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 11421140 - 11421232
Alignment:
Q  19 tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatga 111  Q
    ||||||||| |||  ||| |||||| ||||||||||||| | ||||||||||| |||  |||||||||||||||| || || ||||| |||||    
T  11421140 tcttctttcccactgtttgtcagttgctctaaatgatgatgctgtcatgaaagcaagcacaaatattgagcaacatttacctaaggatgatga 11421232  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 26139185 - 26139089
Alignment:
Q  43 ttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||||||||||   | ||| ||||||||| |||||||||||| |||||||||| | ||| ||||| ||| ||||||| ||||| | |||||||    
T  26139185 ttctctaaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  40 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||| ||||||||| | | ||| ||||||||| |||||||||||| |||| ||||| |||   ||||| ||| ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 18078976 - 18078847
Alignment:
Q  256 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 355  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| ||||| ||  ||||  ||||   |  |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagtctctgagaagtatttgaattatgaga 18078877  T
Q  356 aattgtctttgttgactgatttccttgtta 385  Q
    | || |||||||||||||||||| ||||||    
T  18078876 acttttctttgttgactgatttctttgtta 18078847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 26110303 - 26110202
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||| | ||||| ||||| ||| ||||||||||||| | |||||    
T  26110303 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccct 26110204  T
Q  138 ct 139  Q
    ||    
T  26110203 ct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26127383 - 26127278
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26127383 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26127284  T
Q  138 cttcta 143  Q
    ||||||    
T  26127283 cttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 18077027 - 18076983
Alignment:
Q  121 ttccaaatcaagaccctcttctattgaatctcagtgtccttcaaa 165  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaaa 18076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 27458477 - 27458443
Alignment:
Q  351 tgagaaattgtctttgttgactgatttccttgtta 385  Q
    |||||| ||||||||||||||||||||||||||||    
T  27458477 tgagaacttgtctttgttgactgatttccttgtta 27458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26177433 - 26177328
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||| ||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26177433 tcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26177334  T
Q  138 cttcta 143  Q
    ||||||    
T  26177333 cttcta 26177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 28136724 - 28136829
Alignment:
Q  280 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 379  Q
    |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||||| || ||| | ||||| | |||||    
T  28136724 gaagatttaagttcttctttgtttgtcaagagtgagcttgagcaactagtctccaagaatcatttggattatgagaacttatctctattgacaggtttcc 28136823  T
Q  380 ttgtta 385  Q
    ||||||    
T  28136824 ttgtta 28136829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 26204566 - 26204494
Alignment:
Q  67 gaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||||||||||||||||| || | ||| |||| || | ||| ||| ||||||||||||| | |||||||    
T  26204566 gaaagtaagatcaaatattgaggaaaattttaccaatgatggtgatataatagtttccaaatctaaaccctct 26204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 38 - 385
Target Start/End: Original strand, 1910 - 2253
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    ||||||| | |||||||||| | | ||||||||||||| ||| |||||||| | || ||||  ||||| |||||||||||||||||||||||||  | ||    
T  1910 tcagtttttttaaatgatgatgctatcatgaaagtaagctcagatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctct 2009  T
Q  138 cttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaaatatgcataaacat 236  Q
     | |||||| ||||||||||||||||||| || |||||||||||||||||| |||          |||||||||||| ||||| ||||||||||||  ||    
T  2010 gtactattgtatctcagtgtccttcaaagcctgctcaaggtattttattgcttcattttagttttaattaattttcttgtgctaaaatatgcataattat 2109  T
Q  237 tatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaag 336  Q
    |||| | | |||| |||     || || |||||||||||||||||||||||||||| ||||||  ||||||||| ||||||   ||||||||||||| ||    
T  2110 tattacctatactttca-----ggtgacccttctcaaagagatgaagatttaagttattcttgggttgtcacaaaggagctacggaatctagtttccgag 2204  T
Q  337 aatcatttagctattgagaaattgtctttgttgactgatttccttgtta 385  Q
    ||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  2205 aattatttggctattgagaacttgtctttgttgactgatttcctagtta 2253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 530 - 621
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatc 129  Q
    |||||| |||||||||| || | ||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| || ||||| ||||    
T  530 tcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatgaaataataatttcccaatc 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 19507 - 19612
Alignment:
Q  280 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 379  Q
    |||||||||||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  ||||||  ||||||||||||||||||||     
T  19507 gaagatttaagttcttcttcgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgagaacatgtctttgttgactgatttct 19606  T
Q  380 ttgtta 385  Q
    ||||||    
T  19607 ttgtta 19612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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