View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_18 (Length: 369)
Name: NF2826_low_18
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 23338327 - 23337996
Alignment:
| Q |
20 |
taacattgattcataataatgtcatggttttattattgattaaacttaaccctgtggttaccaactgctgcttatttaaaaatatttcaaagagtcctgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23338327 |
taacattgattcataataatgtcatggttttatt---gattaaacttaaccctgtggttaccaactgctgcttatttaaaaatatttcaaagagtcctgc |
23338231 |
T |
|
| Q |
120 |
cagattgactcatctgccccctcatattgtcttaatttgttagcatatatctattttatttctttattatggacggcttaaaaggacgaacactttaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23338230 |
cagattgactcatctgccccctcatattgtcttaatttgttagcatat--ctattttatttctttattatggacggcttaaaaggacgaacactttaaat |
23338133 |
T |
|
| Q |
220 |
caaatttagagtatctagtattgcaatgcatgaagaaattttaaaacgtatatcacactaaattttaagttcgattccctgctaccaatttgatgtaaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23338132 |
caaatttagagtatctagtattgcaatgcatgaagaaattttaaaacgtatatcacactacattttaagttcgattccctgctaccaatttgatgtaaca |
23338033 |
T |
|
| Q |
320 |
caatcacaaccattgtctaccttcctgctaccgtcct |
356 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23338032 |
caatcacaaccatcgtctaccttcctgctaccgtcct |
23337996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University