View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_20 (Length: 346)
Name: NF2826_low_20
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 35725174 - 35724835
Alignment:
| Q |
8 |
gagcagagaagaaattgttgtgaattctgattactccttagtccttcctagggcagtgacaagcaattccccgtcgtggaaatttcaagtgctctttagt |
107 |
Q |
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| T |
35725174 |
gagcagagaagaaattgttgtgaattctgattactccttagtccttcctagggcagtgacaagcaattccccgtcgtggaaatttcaagtgctctttagt |
35725075 |
T |
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| Q |
108 |
ttcagagaagaagaaacttgcaacaaattcactgatcacctctacacaacatttaaaggaagtggcttaaccgttttcacagacgacaaaaaacttcaga |
207 |
Q |
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| T |
35725074 |
ttcagagaagaagaaacttgcaacaaattcactgatcacctctacacaacatttaaaggaagtggcttaaccgttttcacagacgacaaaaaacttcaga |
35724975 |
T |
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| Q |
208 |
gaggggaagttttctgtcatggtggttctgtctcctgactccacttctttgcggtggtgcttgtatgagctactttacatcct--------aaatccaat |
299 |
Q |
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| T |
35724974 |
gaggggaagttttctgtcatggtggttctgtctcctgactccacttctttgcggtggtgcttgtatgagctactttacatcctctgatttcaaatccaat |
35724875 |
T |
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| Q |
300 |
ccagtcattatgtttgccctgtcttctacgatgtggatcc |
339 |
Q |
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| T |
35724874 |
tcattcgttatgtttgccctgtcttctacgatgtggatcc |
35724835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 35683652 - 35683814
Alignment:
| Q |
49 |
tccttcctagggcagtgacaagcaattccccgtcgtggaaatttcaagtgctctttagtttcagagaagaagaaacttgcaacaaattcactgatcacct |
148 |
Q |
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| T |
35683652 |
tcctttctatggcagtgactaacacttctccatcatggaaatttcacgtgttcttgagtttcagaggagtagaaactcgaaacaaattcaccgatcacct |
35683751 |
T |
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| Q |
149 |
ctacacaacatttaaaggaagtggcttaaccgttttcacagacgacaaaaaacttcagagagg |
211 |
Q |
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| T |
35683752 |
ctacgcagcgtttatcagaaccggcttaacagttttcaaggacgacacagagcttcagagagg |
35683814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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