View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_21 (Length: 338)
Name: NF2826_low_21
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 3526609 - 3526925
Alignment:
| Q |
2 |
attagttactataaagggttttgtgtgtgcactttgccatttgcttgtctagtgtaagatttgttcaacaaaatccgggggaaaaaatcaaacactcatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3526609 |
attagttactataaagggttttatgtgtgcactttgccatttgtttgtctagtgtaagatttgttcaacaaaatctgggggaaaaaatcaaacactcatt |
3526708 |
T |
|
| Q |
102 |
agatttattcaggttcctcaaagttagctgatcgaatgaataatatttataagttcttatagaaataacatatacatagaaacttatgatgataaacgct |
201 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3526709 |
agatttattaaggttcctcacagttagctgatcgaatgaataatatttataagttcttctagaaataacatatacatagaaacttaagatgataaacgct |
3526808 |
T |
|
| Q |
202 |
ttgtcttttgtttttaacttattttcttctctatttatcacaaaacacaatgcaaattcaagtattgctactcctactaaagaagagtgcttgccgaggc |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3526809 |
ttgtcttgtgtttttaacttattttcttctcta-ttatcacaaaacacaatgcaaattcaagtattgctactcctactaaagaagactgcttgccgaggc |
3526907 |
T |
|
| Q |
302 |
accagtttgtgtcgctta |
319 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3526908 |
accagtttgtgtcgctta |
3526925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 3526123 - 3526265
Alignment:
| Q |
2 |
attagttactataaagggttttgtgtgtgcactttgccatttgcttgtctagtgtaagatttgttcaacaaaatccgg--gggaaaaaatcaaacactca |
99 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||| ||| ||||||||||||||||||||||||||| || | ||||||||| ||||||| |
|
|
| T |
3526123 |
attagttactataaagggttttatgcgtgcactttgtcatttgtttgcctagtgtaagatttgttcaacaaaatctggaagaaaaaaaatcatacactca |
3526222 |
T |
|
| Q |
100 |
ttagatttattcaggttcctcaaagttagctgatcgaatgaat |
142 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||| ||||||| |
|
|
| T |
3526223 |
ctagatctattaaggttcctcacagttaactgatccaatgaat |
3526265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University