View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_23 (Length: 336)
Name: NF2826_low_23
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 90 - 318
Target Start/End: Complemental strand, 27959764 - 27959534
Alignment:
| Q |
90 |
tattattgatgtaaatagagtataacgaatcatcatgtatatattatatatgatcatatacaatttcaagtggcagcaaaaggcttaatcaattataa-- |
187 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27959764 |
tattattgatgtaaagagagtataacgaatcatcatgtatatat---------------acaatttcaagtggcagcaaaaggcttaatcaattataaaa |
27959680 |
T |
|
| Q |
188 |
--ctct---------tctatcataggaagttaggaacatctatctat----aatgtacttgtatctttgttgcacctttgtttagtgttcttggctctac |
272 |
Q |
| |
|
|| | ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
27959679 |
tactataattatacgtctatcataggaaatcaggaacatctatctatctataatgtacttgtatctttgttgcatctttgtttagtgctcttggctctac |
27959580 |
T |
|
| Q |
273 |
gctgctcatagtaatctctgaccatctaaaatgttctgcaattctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27959579 |
gctgctcatagtaatctctgaccatctaaaatgttctgcaattctt |
27959534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27959966 - 27959898
Alignment:
| Q |
1 |
tgattaaatagacacaattatgcaggctagcatatatcacatgggtctggtttagtgtttcatgaagat |
69 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27959966 |
tgattaaatagacacaattatgcaggcatgcatatatcatatgggtctggtttagtgtttcatgaagat |
27959898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University