View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_24 (Length: 334)
Name: NF2826_low_24
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 41530840 - 41530767
Alignment:
| Q |
252 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
325 |
Q |
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| T |
41530840 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
41530767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 41531071 - 41530960
Alignment:
| Q |
21 |
gcaccaactccatcaacattctttgacataannnnnnnngtcccatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgatt |
120 |
Q |
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| T |
41531071 |
gcacaaactccatcaaaattcttggacataattttttttgtcctatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgatt |
41530972 |
T |
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| Q |
121 |
ttgaatgtaccg |
132 |
Q |
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|||||||||||| |
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| T |
41530971 |
ttgaatgtaccg |
41530960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 817375 - 817448
Alignment:
| Q |
252 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
325 |
Q |
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|||||| |||||||||||| |||||||||||| ||||| || || ||||||||||||||||| ||||||||||| |
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| T |
817375 |
agagttatgtgcaagtgtgatttttgtgggactgaaaaacaggcacttagtgaatgggaacgccacacaggttc |
817448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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