View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_3 (Length: 590)
Name: NF2826_low_3
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_3 |
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| [»] scaffold1384 (1 HSPs) |
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| [»] scaffold1183 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 52807107 - 52806534
Alignment:
| Q |
1 |
agaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtcatccacaagtcactcctctacatgtaaccatcactttacttacctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52807107 |
agaggctgcttcagttttgaagcattctcttgtgttggctagaaggcgaggtcatccacaagtcactcctctacatgtagccatcactttacttacctta |
52807008 |
T |
|
| Q |
101 |
agactaagttccttcaaaagagcttgtcttaagtctcatcagcctcaccatcaaacttcacaacatccacttcaatctagagctcttgagctttgtttca |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52807007 |
agactaagttccttcaaaagggcttgtcttaagtctcatcagcctcaccatcaaacttcacaacatccacttcaatctagggctcttgagctttgtttca |
52806908 |
T |
|
| Q |
201 |
atgtagctcttaataggttaccaacaacaccttctcctttgattcactctcagccttcactttccaatgctctcattgctgcattgaaaagagcacaagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52806907 |
atgtagctcttaataggttaccaacaacaccttctcctttgattcactctcagccttcactttccaatgctcttattgctgcattgaaaagagcacaagc |
52806808 |
T |
|
| Q |
301 |
tcatcaaagacgaggttccatagaacagcagcagcaacaacagcaaactgttcttactgtcaaagttgagcttgaacagcttattatatctatacttgat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806807 |
tcatcaaagacgaggttccatagaacagcagcagcaacaccagcaaactgttcttactgtcaaagttgagcttgaacagcttattatatctatacttgat |
52806708 |
T |
|
| Q |
401 |
gatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaagaacaatttagaagactctttctcaccttctaattctgttttta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806707 |
gatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaagaacaatttagaagactctttctcaccttctaattctgttttta |
52806608 |
T |
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| Q |
501 |
aatgttataatagttctggtggtggtgtgttttcatctccatgttcgccttcaactagtgagaatcatagagaa |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806607 |
aatgttataatagttctggtggtggtgtgttttcatctccatgttcgccttcaactagtgagaatcatagagaa |
52806534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 53818169 - 53818251
Alignment:
| Q |
351 |
ttcttactgtcaaagttgagcttgaacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagct |
433 |
Q |
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| T |
53818169 |
ttcttgctgtcaaagttgaattggaacaactcatcatatcaattcttgatgatcctagtgttagtagggtcatgagagaagct |
53818251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 40588613 - 40588529
Alignment:
| Q |
372 |
ttgaacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaa |
456 |
Q |
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|||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
40588613 |
ttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctagcactcttgttaa |
40588529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 25118305 - 25118339
Alignment:
| Q |
398 |
gatgatcctagtgttagtagggttatgagagaagc |
432 |
Q |
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| T |
25118305 |
gatgatcctagtgttagtagggttatgagagaagc |
25118339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 476
Target Start/End: Original strand, 16611234 - 16611558
Alignment:
| Q |
164 |
catccacttcaatctagagctcttgagctttgtttcaatgtagctcttaataggttaccaacaac-ac--cttctcctttgattcactctcagc------ |
254 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| | ||||| || || |||| |||||| |||| | |||| |
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| T |
16611234 |
catcctcttcaatgtagagctcttgaactttgcttcaatgttgctcttaatagacttccaactactactacttcacctttgcttcaaccacagcatgttc |
16611333 |
T |
|
| Q |
255 |
cttcactttccaatgctctcattgctgcattgaaaagagcacaagctcatcaaagacgaggttccatagaacag---cagcagcaacaacagcaaactgt |
351 |
Q |
| |
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|||||||||| ||||| ||||||||||| | |||||||| ||||||||||||||| | || | || || || || ||||| || |||||| | | |
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| T |
16611334 |
cttcactttctaatgcactcattgctgctcttaaaagagctcaagctcatcaaagaagggggtgtattgagcaaaaccaacagcagcagcagcaaccact |
16611433 |
T |
|
| Q |
352 |
tcttactgtcaaagttgagcttgaacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactctt |
451 |
Q |
| |
|
| | | ||| |||||||| ||||| ||||||||| | || || |||||||| ||| ||||||||| ||||||||||||||||| || |||||| || | |
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| T |
16611434 |
tttgagtgttaaagttgaacttgatcagcttattctttccattcttgatgacccttctgttagtagagttatgagagaagctggtttttctagtccttct |
16611533 |
T |
|
| Q |
452 |
gttaagaacaatttagaagactctt |
476 |
Q |
| |
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||||| |||||||| ||| |||||| |
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| T |
16611534 |
gttaaaaacaatttggaaaactctt |
16611558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 766 - 682
Alignment:
| Q |
372 |
ttgaacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaa |
456 |
Q |
| |
|
||||||| || || |||||||| | |||||| ||| || ||||||| ||||||||||||||||| |||||| |||| |||||||| |
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| T |
766 |
ttgaacaactaataatatctattcctgatgacccttgtattagtagagttatgagagaagctggtttctctggtacacttgttaa |
682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 456
Target Start/End: Original strand, 936 - 1003
Alignment:
| Q |
389 |
tctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaa |
456 |
Q |
| |
|
||||| ||| |||| ||| || ||||||| ||||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
936 |
tctattcttaatgacccttgtattagtagagttatgagagaagctggtttctcgagtacacttgttaa |
1003 |
T |
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