View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_31 (Length: 284)
Name: NF2826_low_31
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 1154922 - 1154652
Alignment:
| Q |
1 |
atttactgacaatgatgagtcaatgtttgctgaattcaaaaaatgcttgatggttgagtttgatatgactgatttgggaaagattaggtactttcttggc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1154922 |
atttactggcaatgatgagtcaatgtttgctgaattcaaaaaatgcttgatggttgagtttgatatgactgatttgggaaagattaggtactttcttggc |
1154823 |
T |
|
| Q |
101 |
gttg-aagtaattcaaaatactgatggcattttccattagtcaaaaaagatatgtgatggaagtattggaaagatttggaatggacaaaagcaattctgt |
199 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1154822 |
gttggaagtaattcaaaagactgatggcatttttcattagtcaaaaaagatatgtgatggaagtattggagagatttggaatggacaaaagcaattctgt |
1154723 |
T |
|
| Q |
200 |
ccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttact |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1154722 |
ccactatccaactgctcttggacagaagcttcgaaaggatcatgatggcatgaagattgatagtacttact |
1154652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 608936 - 608995
Alignment:
| Q |
59 |
tttgatatgactgatttgggaaagattaggtactttcttggcgttgaagtaattcaaaat |
118 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||||||| || ||||||| ||||||| |
|
|
| T |
608936 |
tttgctatgactgatttgggaaaaatgaggtactttcttggtgtggaagtaactcaaaat |
608995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University