View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_38 (Length: 250)
Name: NF2826_low_38
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46313403 - 46313168
Alignment:
| Q |
1 |
tttttagttcagaaactaataacaagnnnnnnn-aacagactaaccaaactaataacaagttattaacatattaaatggtctgataatnnnnnnnnnnnn |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46313403 |
tttttagttcagaaactaataacaagttttttttaacagactaaccaaactaataacaagttattaacagattaaatggtctgataataaaaaataaaaa |
46313304 |
T |
|
| Q |
100 |
nnnn---cttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgataccggccaagacttgttcca |
196 |
Q |
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| T |
46313303 |
aaaaaaacttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgataccggccaagacttgttcca |
46313204 |
T |
|
| Q |
197 |
cctaggaatcgaactaaggttcttccgaacaatgat |
232 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
46313203 |
cctaggaatcgaactagggttcttccgaacaatgat |
46313168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 24978864 - 24978763
Alignment:
| Q |
130 |
ggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctaggaatcgaactaaggttcttccgaaca |
227 |
Q |
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| T |
24978864 |
ggggaagggggccttggtaattcagagttcggctttgaggtaagtataacccggccaagaattgttccacctaggaatcgaactcacgttctcccaaaca |
24978765 |
T |
|
| Q |
228 |
at |
229 |
Q |
| |
|
|| |
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|
| T |
24978764 |
at |
24978763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 3195482 - 3195427
Alignment:
| Q |
105 |
ttttggcattaaccctccagtttcc-ggggaaaggggccctggtaatccggagttc |
159 |
Q |
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| T |
3195482 |
ttttggcgttaaccctccagtttccaggggaaagaggccctggtaatccggagttc |
3195427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 49634527 - 49634456
Alignment:
| Q |
105 |
ttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata |
177 |
Q |
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|||| ||||||||||||| ||| || |||||||||||| ||||||||||||||| | || |||||||| |||| |
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| T |
49634527 |
tttttgcattaaccctccggtt-ccagggaaaggggccttggtaatccggagtttggccttgaggtaaggata |
49634456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 10877274 - 10877154
Alignment:
| Q |
104 |
cttttggcattaaccctccagtttcc-ggggaaa--ggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacc |
198 |
Q |
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| T |
10877274 |
cttttggcattaaccgtccggttcctaggggaaattggggtcctggtgatctagagttcggccatgaggtaaggatagtctggccaagaattgttctaca |
10877175 |
T |
|
| Q |
199 |
taggaatcgaactaaggttct |
219 |
Q |
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||||||||||||| ||||||| |
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| T |
10877174 |
taggaatcgaactcaggttct |
10877154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 22506425 - 22506316
Alignment:
| Q |
105 |
ttttggcattaaccctccagtttccgg-ggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctag |
201 |
Q |
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||||||| |||||||||| ||| || | |||||||| |||| |||| |||||||||| | |||||||| |||| | |||||| | |||||||| |||| |
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| T |
22506425 |
ttttggcgttaaccctccggttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactag |
22506326 |
T |
|
| Q |
202 |
gaatcgaact |
211 |
Q |
| |
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|||||||||| |
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| T |
22506325 |
gaatcgaact |
22506316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 53380971 - 53380934
Alignment:
| Q |
180 |
ggccaagacttgttccacctaggaatcgaactaaggtt |
217 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||| |
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| T |
53380971 |
ggccaagaattgttccacctaggaatcgaacttaggtt |
53380934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 17931604 - 17931544
Alignment:
| Q |
113 |
ttaaccctccagtt-tccggggaaaggggccctggtaatccggagttcgaccatgaggtaa |
172 |
Q |
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| T |
17931604 |
ttaaccctccggttgtcaggggaagggggccccggtaatccggagttcggccgtgaggtaa |
17931544 |
T |
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