View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_39 (Length: 247)
Name: NF2826_low_39
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3703000 - 3703212
Alignment:
| Q |
1 |
caaataagagatcaattaataaaa-ttgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatat |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703000 |
caaataagagatcaattaataaaaattgcaacattcttttctttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatat |
3703099 |
T |
|
| Q |
100 |
agttaagttacatcagtattttaaaagcacacttcttaataatacttgttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703100 |
agttaagttacatcagtattttaaaagcacacttcttaataatacttcttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaa |
3703199 |
T |
|
| Q |
200 |
tgtatacacacaa |
212 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
3703200 |
tgtatacatacaa |
3703212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 3699352 - 3699475
Alignment:
| Q |
1 |
caaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
3699352 |
caaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaattgatata |
3699451 |
T |
|
| Q |
101 |
gttaagttacatcagtattttaaa |
124 |
Q |
| |
|
||| |||||||||| | ||||||| |
|
|
| T |
3699452 |
gttcagttacatcattgttttaaa |
3699475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University