View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_42 (Length: 242)
Name: NF2826_low_42
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26880324 - 26880546
Alignment:
| Q |
1 |
taacaacggcatgatccttatttggagataatttatctgaatcaatttgtattatcatccatcaagctaaagaagtagaacaaatt---tcttctcgaca |
97 |
Q |
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| T |
26880324 |
taacagcggcatgatccttatttggagataatttatctgaatcaatttgtattatcatccatcaagctaaagaagtagaacaaattatttcttctcgaca |
26880423 |
T |
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| Q |
98 |
ttaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26880424 |
ttaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaat |
26880523 |
T |
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| Q |
198 |
ttcaagagtatctataatgactg |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
26880524 |
ttcaagagtatctataatgactg |
26880546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
| Q |
155 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga |
204 |
Q |
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| T |
40250196 |
atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga |
40250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40249863 - 40249897
Alignment:
| Q |
1 |
taacaacggcatgatccttatttggagataattta |
35 |
Q |
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| T |
40249863 |
taacaacagcatgatccttatttggagataattta |
40249897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
| Q |
155 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg |
216 |
Q |
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| T |
40707441 |
atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg |
40707502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 15161003 - 15161043
Alignment:
| Q |
40 |
aatcaatttgtattatcatccatcaagctaaagaagtagaa |
80 |
Q |
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| T |
15161003 |
aatcaatttatattatcatcaatcaagctaaagaagcagaa |
15161043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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