View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2826_low_48 (Length: 213)
Name: NF2826_low_48
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 33858543 - 33858364
Alignment:
| Q |
15 |
cacagagaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
114 |
Q |
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| T |
33858543 |
cacagagaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
33858444 |
T |
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| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagact |
194 |
Q |
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| T |
33858443 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagact |
33858364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 33922380 - 33922559
Alignment:
| Q |
15 |
cacagagaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
114 |
Q |
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| T |
33922380 |
cacagagaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
33922479 |
T |
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| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagact |
194 |
Q |
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| T |
33922480 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagact |
33922559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 33185295 - 33185217
Alignment:
| Q |
116 |
tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaagact |
194 |
Q |
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| T |
33185295 |
tctatcttcctctattctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaagact |
33185217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 43853990 - 43854034
Alignment:
| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttc |
160 |
Q |
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| T |
43853990 |
atctatcttcctctgttctttgttctc-tttttagttcctcggttc |
43854034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 30213242 - 30213178
Alignment:
| Q |
130 |
ttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaagact |
194 |
Q |
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||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||| | ||||||| |
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| T |
30213242 |
ttctttgttttcttttt-agttcctctgtcctttgttcttttggatttaatgttttaactaagact |
30213178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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