View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826_low_49 (Length: 209)

Name: NF2826_low_49
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826_low_49
NF2826_low_49
[»] chr2 (6 HSPs)
chr2 (13-192)||(42280522-42280701)
chr2 (46-134)||(42268798-42268886)
chr2 (134-192)||(42259972-42260030)
chr2 (134-192)||(42268717-42268775)
chr2 (138-170)||(42254393-42254425)
chr2 (160-192)||(42313637-42313669)
[»] scaffold0002 (1 HSPs)
scaffold0002 (134-192)||(488807-488865)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 42280701 - 42280522
Alignment:
Q  13 gagatgaaaaaagcattgagactannnnnnnnncttaagaaaaaagccatctcaacaataaaggaaatagtaaaaactctagggtttatgtaaaccttaa 112  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42280701 gagatgaaaaaagcattgagactacttttttttcttaagaaaaaagccatctcaacaataaaggaaatagtaaaaactctagggtttatgtaaaccttaa 42280602  T
Q  113 gaagtatccatagacataactaaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaggcccttact 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42280601 gaagtatccatagacataactaaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttact 42280522  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 42268886 - 42268798
Alignment:
Q  46 cttaagaaaaaagccatctcaacaataaaggaaatagtaaaaactctagggtttatgtaaaccttaagaagtatccatagacataacta 134  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  42268886 cttaagaaaaaagacatctcaacaataaaggaaatagtaaaaactttagggtttatgtaaacctaaagaagtatccatagacacaacta 42268798  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 42260030 - 42259972
Alignment:
Q  134 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaggcccttact 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42260030 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttact 42259972  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 42268775 - 42268717
Alignment:
Q  134 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaggcccttact 192  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||||    
T  42268775 aaatattgtataaaacatttgcacaacttgctatcaagattaataaacaagcccttact 42268717  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 42254425 - 42254393
Alignment:
Q  138 attgtataaaacatctgcacaacttgttatcaa 170  Q
    ||||||||||| |||||||||||||||||||||    
T  42254425 attgtataaaatatctgcacaacttgttatcaa 42254393  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 42313669 - 42313637
Alignment:
Q  160 cttgttatcaagatcaatatacaggcccttact 192  Q
    ||||||||||||||||||||||| |||||||||    
T  42313669 cttgttatcaagatcaatatacaagcccttact 42313637  T

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Target: scaffold0002 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 488865 - 488807
Alignment:
Q  134 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaggcccttact 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  488865 aaatattgtataaaacatctgcacaacttgttatcaagatcaatatacaagcccttact 488807  T

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