View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2826_low_7 (Length: 519)

Name: NF2826_low_7
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2826_low_7
NF2826_low_7
[»] chr1 (2 HSPs)
chr1 (219-399)||(6163389-6163569)
chr1 (460-500)||(6163287-6163328)
[»] chr8 (2 HSPs)
chr8 (214-400)||(28158708-28158896)
chr8 (460-500)||(28158956-28158996)
[»] chr6 (2 HSPs)
chr6 (216-400)||(14359425-14359609)
chr6 (460-500)||(14359330-14359370)
[»] chr4 (1 HSPs)
chr4 (100-208)||(55692095-55692203)
[»] chr3 (2 HSPs)
chr3 (297-400)||(4839966-4840069)
chr3 (460-500)||(4839866-4839906)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 6163569 - 6163389
Alignment:
Q  219 tcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacattat 318  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6163569 tcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacggaaaagtatataaaagtgacacattat 6163470  T
Q  319 tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6163469 tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttaatggaact 6163389  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 6163328 - 6163287
Alignment:
Q  460 tgttatgtctagtagtaccttaaggc-ttatatagccaatta 500  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  6163328 tgttatgtctagtagtaccttaaggctttatatagccaatta 6163287  T

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Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 214 - 400
Target Start/End: Original strand, 28158708 - 28158896
Alignment:
Q  214 agaattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaa--agtgac 311  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||    
T  28158708 agaattcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaattaacggaaaagtatataaattagtgac 28158807  T
Q  312 acattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28158808 acattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatggaactc 28158896  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 460 - 500
Target Start/End: Original strand, 28158956 - 28158996
Alignment:
Q  460 tgttatgtctagtagtaccttaaggcttatatagccaatta 500  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28158956 tgttatgtctagtagtaccttaaggcttatatagccaatta 28158996  T

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Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 216 - 400
Target Start/End: Complemental strand, 14359609 - 14359425
Alignment:
Q  216 aattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacat 315  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||    
T  14359609 aattcaatatgaacttgcagaagaagctcatttgtgatagagaaatttgtataggctattaaacttgaaactaacggaaaagtatataaaagtgacaaat 14359510  T
Q  316 tattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc 400  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14359509 tattacaattcaggatagaactcataagtgacattagtctctcttttttacaagtgacacattatcacaattcttgatggaactc 14359425  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 14359370 - 14359330
Alignment:
Q  460 tgttatgtctagtagtaccttaaggcttatatagccaatta 500  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14359370 tgttatgtctagtagtaccttaaggcttatatagccaatta 14359330  T

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Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 55692095 - 55692203
Alignment:
Q  100 gtgatatgaaagatgtattttgtccatgaaacaatgtgaagagaagaagtgaggtggcacattgtagggatggaagtggccctactagcacgattgcaag 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55692095 gtgatatgaaagatgtattttgtccatgaaacaatgagaagagaagaagtgaggtggcacattgtagggatggaagtgtccctactagcacgattgcaag 55692194  T
Q  200 acgtggaaa 208  Q
    |||||||||    
T  55692195 acgtggaaa 55692203  T

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Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 4840069 - 4839966
Alignment:
Q  297 gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatgga 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4840069 gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatgga 4839970  T
Q  397 actc 400  Q
    ||||    
T  4839969 actc 4839966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 4839906 - 4839866
Alignment:
Q  460 tgttatgtctagtagtaccttaaggcttatatagccaatta 500  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  4839906 tgttatgtctaatagtaccttaaggcttatatagccaatta 4839866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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