View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2826_low_9 (Length: 461)
Name: NF2826_low_9
Description: NF2826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2826_low_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 9 - 461
Target Start/End: Complemental strand, 39983080 - 39982628
Alignment:
| Q |
9 |
gagatgaaaccgaattgctgtgttggttggattgcatattgactatgaatgaaacagaaagtccatgttatattctttgtcaggtcagccaaggaggcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39983080 |
gagatgaaaccgaattgctgtgttggttggattgcatattgactatgaatgaaacagaaagtccatgttatattctttgtcaggtcagccaaggaggcat |
39982981 |
T |
|
| Q |
109 |
ctgctcactactggctggagtatttttgttagccaaaagaatcttgtttctggggatgcagttctctttctaaggtgtgtgtgtttatgttgaactgaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39982980 |
ctgctcactactggctggagtatttttgttagccaaaagaatcttgtttctggggatgcagttctctttctaaggtgtgtgtgtttatgttgaactgaga |
39982881 |
T |
|
| Q |
209 |
cttattgaattgagactaatctgtataagatagatttttcatatgttgttcctgtaatcattgtcatgctttaatcagaaagtaatgagaaacttcctaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39982880 |
cttattgaattgagactaatctgtatatgatagatttttcatatgttgttcctgtaatcattgtcatgctttaatgagaaagtaatgagaaacttcctaa |
39982781 |
T |
|
| Q |
309 |
taaaaatatttgcatgacctttaccgctcatgaatctctacgtaggggtgaaaacggagagttaagattgggaatcagaagagctgctcgaccaagaaac |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39982780 |
taaaaatatttgcatgacccttaccgctcatgaatctctacgtaggggtgaaaacggagagttaagattgggaatcagaagagctgctcgaccgagaaac |
39982681 |
T |
|
| Q |
409 |
ggtcttcctgaatcaattattggtaaccagagttgttctcctagtttcctttc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39982680 |
ggtcttcctgaatcaattattggtaaccagagttgttctcctagtttcctttc |
39982628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 22236404 - 22236514
Alignment:
| Q |
84 |
tttgtcaggtcagccaaggaggcatctgctcactactggctggagtatttttgttagccaaaagaatcttgtttctggggatgcagttctctttctaagg |
183 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
22236404 |
tttgtcaggtcagccaaggcggcatctactcactactggctggagcatttttgtgaaccaaaagaatcttgtttctggtgatgctgtgctctttctaagg |
22236503 |
T |
|
| Q |
184 |
tgtgtgtgttt |
194 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
22236504 |
tatgtttgttt |
22236514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 350 - 461
Target Start/End: Original strand, 22237081 - 22237192
Alignment:
| Q |
350 |
gtaggggtgaaaacggagagttaagattgggaatcagaagagctgctcgaccaagaaacggtcttcctgaatcaattattggtaaccagagttgttctcc |
449 |
Q |
| |
|
|||||||| |||| |||||| | |||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
22237081 |
gtaggggtcaaaatggagagctgagattgggaatcagaagagctgttagacctagaaacggtcttcctgaatcaatcgttggtaatcagaattgttatcc |
22237180 |
T |
|
| Q |
450 |
tagtttcctttc |
461 |
Q |
| |
|
| ||||||||| |
|
|
| T |
22237181 |
caatttcctttc |
22237192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University