View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2827_high_14 (Length: 338)
Name: NF2827_high_14
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 2502097 - 2502413
Alignment:
| Q |
1 |
gaataaaattcaaagttgaagaagttcctattgtttcacttttcaccagagacaacagttccaaaaacagcaacaaatctcaaacaaaccagaaccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2502097 |
gaataaaattcaaagttgaagaagttcctattgtttcacttttcaccagagacaacagttccaaaaacagcaacaaatctcaaacaaaccagaaccagaa |
2502196 |
T |
|
| Q |
101 |
agttgaacatgaatcatcattatcacctttggaagagaaacgtttctcaaaggaaatagttatgcacaagtatttgaaaatggtgaaacctctttacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2502197 |
agttgaacatgaatcatcattatcacctttggaagagaaacgtttctcaaaggaaatagttatgcacaagtatttgaaaatggtgaaacctctttacata |
2502296 |
T |
|
| Q |
201 |
agggtttctcgtaggtacagccatggtgataaatcaagccctagtgaaaaggttgaggcagaaacagcgacggaaggtgaaaccgtagctgaaaatgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2502297 |
agggtttctcgtaggtacagccatggtgataaatcaagccctagtgaaaaggttgaagcagaaacagcgacggaaggtgaaaccgtagctgaaaatgaag |
2502396 |
T |
|
| Q |
301 |
aaaacaatgctaagact |
317 |
Q |
| |
|
||||||||||||||||| |
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| T |
2502397 |
aaaacaatgctaagact |
2502413 |
T |
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