View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2827_high_15 (Length: 329)
Name: NF2827_high_15
Description: NF2827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2827_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 2484618 - 2484320
Alignment:
| Q |
12 |
gagagagaagaaatcaatcagaacaatcaacagagg-agaagaaatcaattagaaggaattaaaaagggagagaagcaatcaattagaagaatcaaaaca |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2484618 |
gagagagaagaaatcaatcagaataatcaactaagggagaagaaatcaattagaaggaattaaaaagggggagaaacaatcaattagaagaatcaaaaca |
2484519 |
T |
|
| Q |
111 |
gggagaagcaatccaatcaatcagaagaagaaaccaagagggagagatacaatcattcaaaagtatgaagaagagaccaacagagagggacaatcaatca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
2484518 |
gggagaagcaatccaatcaatcagaagaagaaatcaagagggagagatacaatcaatcaaaagaatgaagaagagaccaacagagagggacaatcaatga |
2484419 |
T |
|
| Q |
211 |
gaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaaggggagat |
309 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484418 |
gaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaaggggagat |
2484320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 11828384 - 11828434
Alignment:
| Q |
73 |
aaaagggagagaagcaatcaattagaagaatcaaaacagggagaagcaatc |
123 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11828384 |
aaaagggaaagaagcaatcaattaaaagaatcaaaagggggagaagcaatc |
11828434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 8574462 - 8574429
Alignment:
| Q |
73 |
aaaagggagagaagcaatcaattagaagaatcaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8574462 |
aaaagggagagaagcaatcaattagaagaatcaa |
8574429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University